Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023975.1 Corchorus olitorius cultivar O-4 contig24008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53036

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--33
2
16.5
2
100
0
66
51
0
0
48
1.00
3217--3267
19
2.7
19
77
14
61
47
0
1
50
1.12
8610--8776
83
2.0
83
100
0
334
46
13
16
23
1.82
9391--9458
34
2.0
34
97
0
127
26
17
30
25
1.97
12547--12577
16
1.9
16
100
0
62
83
0
6
9
0.79
14168--14210
21
2.0
21
82
8
52
11
27
32
27
1.92
14155--14304
76
2.0
76
80
5
169
16
28
30
24
1.96
15237--15288
27
1.9
27
88
0
77
15
19
9
55
1.67
20124--20172
21
2.3
21
82
6
55
12
28
18
40
1.86
21300--21357
10
6.4
9
74
21
50
75
3
10
10
1.15
21314--21351
16
2.3
17
86
4
51
81
2
7
7
0.96
22940--23083
76
1.9
76
80
8
168
17
29
29
24
1.97
26142--26243
34
3.0
34
97
0
186
27
17
30
24
1.97
29413--29437
12
2.1
12
100
0
50
0
20
32
48
1.50
35196--35257
30
2.1
30
93
6
108
22
33
3
40
1.70
38710--38783
27
2.7
26
83
8
94
43
22
13
20
1.87
39297--39566
69
3.9
69
89
0
387
28
14
29
27
1.95
39526--39713
50
3.8
50
97
0
340
28
12
28
30
1.93
40375--40522
50
3.0
50
90
0
242
38
13
16
31
1.88
41150--41212
15
4.2
15
82
11
67
9
0
7
82
0.84
41133--41254
39
3.1
39
84
8
133
13
0
9
76
1.02
41163--41255
8
11.6
8
76
11
66
13
0
7
78
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41646--41679
18
2.0
18
88
11
54
14
11
0
73
1.10
51797--51964
39
4.3
39
71
11
103
23
17
20
38
1.93
51797--51964
78
2.2
78
84
2
212
23
17
20
38
1.93
52022--52254
38
6.0
39
72
8
172
25
21
17
35
1.95
52269--52354
38
2.3
37
82
11
95
22
20
18
38
1.94

Tables:   1

The End!