Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023978.1 Corchorus olitorius cultivar O-4 contig24011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4558
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:253 original size:26 final size:26

Alignment explanation


    Indices: 209--258  Score: 66
    Period size: 27  Copynumber: 1.9  Consensus size: 26

        199 CGAAAGAAGA

                      *                
        209 TTTTGGAAATTAATAAAATTGGTAAGT
          1 TTTTGGAAATAAATAAAA-TGGTAAGT

                          *         
        236 TTTTGGAAA-AAATCAAATGGTAA
          1 TTTTGGAAATAAATAAAATGGTAA

        259 AAAGTTTTGT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  25    6  0.29
  26    6  0.29
  27    9  0.43

ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36


Consensus pattern (26 bp):   
TTTTGGAAATAAATAAAATGGTAAGT
Done.