Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023981.1 Corchorus olitorius cultivar O-4 contig24014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18972

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
748--797
27
1.9
26
84
8
66
44
2
18
36
1.61
2838--3268
67
6.4
67
87
2
618
22
19
16
40
1.91
2838--3268
135
3.2
134
86
2
618
22
19
16
40
1.91
2838--3463
67
9.4
66
80
7
285
23
20
16
39
1.92
9796--9830
6
5.8
6
100
0
70
51
0
14
34
1.42
10787--10929
72
2.0
73
97
1
270
30
16
10
42
1.82
11230--11272
21
2.1
21
86
4
61
32
18
20
27
1.96
12698--12733
2
17.5
2
94
5
63
50
0
2
47
1.15
12700--12732
17
1.9
17
100
0
66
48
0
3
48
1.17
12815--12884
35
2.0
35
100
0
140
40
11
14
34
1.82
17985--18032
22
2.2
21
79
13
53
62
0
12
25
1.30

Tables:   1

The End!