Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023983.1 Corchorus olitorius cultivar O-4 contig24016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32923

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1636--1688
27
2.0
27
81
7
63
58
1
9
30
1.40
2032--2091
17
3.4
17
71
13
50
51
1
5
41
1.33
3218--3257
2
21.5
2
85
14
59
47
0
0
52
1.00
4991--5053
23
2.7
23
97
0
117
20
36
25
17
1.94
7352--7387
9
4.0
9
100
0
72
22
55
11
11
1.66
7619--7644
12
2.2
12
100
0
52
46
0
7
46
1.31
7660--7875
70
3.1
70
67
20
187
50
1
11
35
1.49
7869--7915
22
2.1
22
88
7
69
59
2
10
27
1.42
7880--7915
7
4.9
8
83
16
51
61
0
11
27
1.30
7792--7975
93
2.0
93
90
0
287
51
1
12
34
1.49
9469--9493
13
1.9
13
100
0
50
48
0
20
32
1.50
9517--9566
23
2.2
23
81
0
55
56
12
6
26
1.58
10283--10340
19
2.9
19
82
5
62
29
18
12
39
1.87
14423--14539
42
2.8
42
92
0
198
24
25
18
30
1.98
17447--17504
28
2.1
28
96
0
107
53
5
3
37
1.40
18317--18341
3
8.3
3
100
0
50
32
32
0
36
1.58
25577--25775
22
9.1
22
77
11
160
41
10
14
34
1.79
25568--25648
21
3.8
21
76
14
76
50
9
16
23
1.74
26813--26891
22
3.6
21
77
13
70
43
10
13
32
1.78
26788--26850
22
2.9
21
73
13
56
50
9
15
23
1.73
26830--26891
22
2.8
22
80
7
72
40
8
14
37
1.76
26853--26901
22
2.2
22
85
7
64
34
10
10
44
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26954--26990
2
18.5
2
100
0
74
51
0
0
48
1.00
27044--27099
22
2.5
22
82
5
60
44
10
5
39
1.62
27345--27442
22
4.5
21
71
12
72
33
17
10
38
1.83
27506--27721
22
9.9
22
74
9
138
35
14
12
37
1.84
28198--28225
2
14.0
2
100
0
56
50
0
0
50
1.00
29664--29783
58
2.1
59
93
1
206
45
14
8
32
1.74
31270--31305
3
11.7
3
94
5
63
33
0
0
66
0.92

Tables:   1

The End!