Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023987.1 Corchorus olitorius cultivar O-4 contig24020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23972

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
741--798
2
29.5
2
77
16
59
43
5
1
50
1.35
741--798
13
4.5
13
77
14
59
43
5
1
50
1.35
2241--2275
2
17.5
2
100
0
70
0
48
0
51
1.00
3096--3148
22
2.4
22
77
0
61
52
7
15
24
1.68
3169--3286
22
5.4
21
72
11
94
38
10
11
38
1.76
3183--3286
44
2.4
44
86
3
138
40
10
10
38
1.74
4817--5821
500
2.0
500
88
3
1493
31
18
18
30
1.95
6027--6085
27
2.2
28
88
11
88
45
8
0
45
1.33
7625--7708
44
1.9
44
85
0
114
39
9
9
41
1.70
7627--7752
22
5.7
22
70
9
78
38
8
10
42
1.70
7633--7752
44
2.7
43
80
8
109
39
9
10
40
1.72
13139--13178
3
13.0
3
94
5
71
0
32
0
67
0.91
17986--18041
28
2.0
28
100
0
112
35
14
14
35
1.86

Tables:   1

The End!