Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023992.1 Corchorus olitorius cultivar O-4 contig24025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20664

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5294--5398
29
3.7
28
81
6
95
23
14
21
40
1.90
6026--6055
9
3.4
9
95
4
53
83
0
0
16
0.65
7702--7727
2
13.0
2
100
0
52
50
0
50
0
1.00
8395--8474
41
2.0
41
82
5
99
22
11
16
50
1.76
10744--10777
6
6.0
6
86
13
54
32
52
14
0
1.42
10765--10806
16
2.6
16
80
0
57
35
40
14
9
1.78
11238--11320
31
2.6
31
76
12
80
30
3
7
59
1.42
11571--11624
21
2.5
20
77
11
54
40
1
3
53
1.29
11561--11627
11
5.9
12
69
23
56
40
1
2
55
1.24
11596--11627
16
2.1
15
94
5
55
37
0
0
62
0.95
11761--11838
32
2.4
32
85
4
104
41
37
14
7
1.74
11761--11851
16
5.7
16
70
10
62
38
39
15
6
1.73
11761--11851
32
2.8
32
81
3
103
38
39
15
6
1.73
13627--13679
22
2.3
22
80
6
61
77
13
9
0
0.99
13631--13683
27
1.9
27
85
11
72
77
13
9
0
0.99
14592--14832
108
2.2
108
84
8
301
37
17
15
29
1.90
14630--14832
37
5.7
35
82
10
225
36
17
16
29
1.91
14799--14959
53
3.0
53
85
3
209
34
14
21
29
1.93
16015--16073
22
2.7
22
97
0
109
11
44
25
18
1.84
18769--18825
16
3.8
15
70
29
50
43
15
17
22
1.87
18768--18837
28
2.5
28
97
0
131
41
18
17
22
1.90
19332--19386
28
2.0
28
89
3
85
50
23
12
12
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20441--20478
19
2.0
19
100
0
76
26
21
5
47
1.71

Tables:   1

The End!