Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023996.1 Corchorus olitorius cultivar O-4 contig24029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51333

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1778--2279
247
2.0
248
92
1
846
41
18
11
28
1.86
9628--9654
14
1.9
14
100
0
54
44
11
22
22
1.84
10026--10112
28
3.0
28
83
8
95
12
8
5
73
1.23
14812--14898
43
2.0
43
95
0
156
26
32
17
24
1.97
17341--17412
36
2.0
36
83
5
92
29
13
29
27
1.95
17343--17428
18
4.8
18
77
11
79
31
13
26
27
1.94
17716--17761
17
2.7
17
86
0
56
41
0
4
54
1.20
25068--25105
15
2.5
15
87
8
51
47
15
21
15
1.82
29027--29103
18
4.3
18
81
9
86
19
6
15
58
1.59
29838--30057
39
5.6
39
82
12
238
30
15
15
37
1.89
32228--32286
30
2.0
30
86
6
84
37
16
5
40
1.71
35964--35989
10
2.6
10
100
0
52
57
0
0
42
0.98
36533--36567
14
2.5
14
90
0
61
62
11
2
22
1.41
39004--39328
66
4.9
67
88
1
408
29
22
20
27
1.98
43636--43677
21
2.0
21
95
0
75
35
28
16
19
1.93
46665--46711
26
1.9
24
87
12
69
40
4
27
27
1.75
47827--47920
45
2.2
42
88
7
136
34
4
21
40
1.73
48535--48578
23
1.9
23
81
9
54
61
0
13
25
1.32
48546--48723
97
1.9
94
90
5
286
51
2
12
34
1.52

Tables:   1

The End!