Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000024.1 Corchorus olitorius cultivar O-4 contig00024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:462 original size:36 final size:36

Alignment explanation


    Indices: 417--491  Score: 114
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        407 ACTAAAGAGT

                        *    *       *          
        417 AAAAGAAAGAGTGAGCAGTAATTAGTGATTAAGCTA
          1 AAAAGAAAGAGTAAGCAATAATTAGGGATTAAGCTA

                                           *    
        453 AAAAGAAAGAGTAAGCAATAATTAGGGATTAGGCTA
          1 AAAAGAAAGAGTAAGCAATAATTAGGGATTAAGCTA

               
        489 AAA
          1 AAA

        492 CAAAGTAAAA


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.51, C:0.05, G:0.24, T:0.20


Consensus pattern (36 bp):   
AAAAGAAAGAGTAAGCAATAATTAGGGATTAAGCTA
Done.