Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024001.1 Corchorus olitorius cultivar O-4 contig24034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8430
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31


Found at i:791 original size:29 final size:29

Alignment explanation


    Indices: 734--814  Score: 83
    Period size: 29  Copynumber: 2.8  Consensus size: 29

        724 CAAAGCTTTG

                *                  **     
        734 ACACGAGTGCA-AACCCACACTCAAAACAA
          1 ACACAAGTGCACAACCCACACT-TGAACAA

            * *      *                   
        763 TCCCAAGTGTACAACCCACACTTGAACAA
          1 ACACAAGTGCACAACCCACACTTGAACAA

                             *     
        792 ACACAAGTGCACAACCCGCACTT
          1 ACACAAGTGCACAACCCACACTT

        815 AAATAAAATC


Statistics
Matches: 41,  Mismatches: 10, Indels: 2
        0.77            0.19        0.04

Matches are distributed among these distances:
  29   31  0.76
  30   10  0.24

ACGTcount: A:0.41, C:0.36, G:0.11, T:0.12


Consensus pattern (29 bp):   
ACACAAGTGCACAACCCACACTTGAACAA

Found at i:7524 original size:4 final size:4

Alignment explanation


    Indices: 7517--7545  Score: 58
    Period size: 4  Copynumber: 7.2  Consensus size: 4

       7507 TATTAATATA

                                                
       7517 TATT TATT TATT TATT TATT TATT TATT T
          1 TATT TATT TATT TATT TATT TATT TATT T

       7546 TTCACTAGGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   25  1.00

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (4 bp):   
TATT

Done.