Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024011.1 Corchorus olitorius cultivar O-4 contig24044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111358

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1803--1891
34
2.7
34
81
10
98
39
13
7
39
1.74
1990--2062
30
2.4
30
93
4
121
32
36
13
16
1.88
2238--2276
15
2.5
16
91
4
62
64
12
10
12
1.51
3037--3062
11
2.4
11
100
0
52
69
7
15
7
1.35
17777--17803
1
27.0
1
100
0
54
100
0
0
0
0.00
19665--19741
30
2.6
30
83
4
102
37
19
11
31
1.88
21701--21745
2
23.0
2
90
4
74
48
0
48
2
1.13
24744--24796
5
11.6
5
86
6
53
84
0
0
15
0.61
24770--24799
1
30.0
1
93
0
51
96
0
0
3
0.21
24744--24799
11
5.2
11
81
8
62
85
0
0
14
0.59
25095--25146
3
17.3
3
95
0
95
69
0
0
30
0.89
34690--34733
17
2.6
17
82
3
54
9
11
6
72
1.27
38483--38547
26
2.4
27
89
5
105
16
23
1
58
1.47
38666--38748
35
2.4
34
86
6
112
21
21
3
53
1.61
38794--38953
21
7.8
22
74
16
130
20
21
5
53
1.65
38666--38997
79
4.3
75
83
8
347
20
21
5
53
1.66
38772--39024
79
3.2
79
90
2
384
19
21
6
52
1.68
38737--38948
7
29.7
7
69
14
85
19
22
5
53
1.65
38762--38938
15
12.8
14
70
18
88
19
22
5
53
1.65
43034--43190
60
2.6
60
85
5
194
38
16
21
23
1.93
43092--43213
33
3.9
32
73
16
112
37
15
22
24
1.93
43196--43394
30
6.6
30
89
3
294
40
14
20
24
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43196--43394
59
3.3
59
89
2
299
40
14
20
24
1.90
43474--43759
51
5.5
50
73
11
220
33
22
15
28
1.95
43819--43911
24
3.9
24
84
0
114
44
7
18
30
1.77
43858--43941
8
11.0
8
71
12
61
46
3
20
29
1.67
43880--43926
14
3.2
14
82
11
58
46
6
21
25
1.74
43971--44251
96
2.9
96
90
0
445
37
18
21
23
1.94
43992--44192
35
6.0
34
68
19
127
38
18
19
22
1.93
45298--45340
20
2.2
19
83
4
50
9
11
2
76
1.10
45640--45670
15
2.1
15
93
0
53
22
22
19
35
1.96
48103--48182
27
2.8
28
81
16
101
40
22
16
21
1.91
48498--48611
50
2.3
50
81
4
133
28
30
10
29
1.90
49504--49606
51
2.0
51
92
0
170
15
15
28
40
1.88
57405--57430
11
2.4
11
100
0
52
34
11
26
26
1.91
60973--61016
21
2.1
21
91
0
70
22
20
18
38
1.93
63652--63691
21
1.9
21
94
0
71
17
27
15
40
1.89
69657--70127
68
7.1
67
82
6
503
38
13
23
25
1.91
69657--70118
135
3.5
134
82
6
528
38
13
23
25
1.91
70024--70269
64
3.8
63
83
4
262
36
14
22
26
1.93
70478--70610
51
2.6
51
92
1
232
36
9
26
27
1.88
71016--71059
21
2.1
21
91
0
70
25
18
18
38
1.92
78484--78523
15
2.6
16
88
4
55
15
10
12
62
1.54
80729--80801
27
2.5
30
89
6
107
41
23
16
19
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83988--84027
21
1.9
21
89
0
62
35
20
17
27
1.95
91608--91649
21
2.0
21
95
0
75
21
19
26
33
1.97
92015--92059
11
4.1
11
100
0
90
8
44
8
37
1.67
94524--94565
21
2.0
21
95
0
75
21
19
26
33
1.97
97505--97580
29
2.7
29
95
2
136
17
11
34
36
1.86
100438--100621
61
3.0
61
76
6
201
35
12
25
26
1.92
100425--100713
123
2.3
123
82
3
332
34
14
24
26
1.94
109797--109838
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!