Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024013.1 Corchorus olitorius cultivar O-4 contig24046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8589
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35


Found at i:461 original size:20 final size:20

Alignment explanation


    Indices: 424--461  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        414 AAATCAAATA

                         *      
        424 TTGATTTATTACATCATTAT
          1 TTGATTTATTACAACATTAT

                               
        444 TTGATTTACTTA-AACATT
          1 TTGATTTA-TTACAACATT

        462 TCAAATTACA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   13  0.81
  21    3  0.19

ACGTcount: A:0.32, C:0.11, G:0.05, T:0.53


Consensus pattern (20 bp):   
TTGATTTATTACAACATTAT
Done.