Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024015.1 Corchorus olitorius cultivar O-4 contig24048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67105

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1376--1423
25
1.9
25
95
0
87
39
12
16
31
1.86
1565--1640
29
2.7
29
85
4
102
38
26
14
21
1.91
2870--3124
78
3.4
74
78
11
263
26
16
17
39
1.91
2870--3123
37
6.9
34
76
16
213
26
16
17
39
1.91
5712--5754
18
2.5
17
82
14
52
81
2
16
0
0.79
5720--5754
18
1.9
18
88
11
54
82
0
17
0
0.66
5810--5860
14
3.7
13
82
15
59
43
7
11
37
1.71
6431--6478
21
2.2
21
79
13
53
50
6
14
29
1.67
6427--6479
22
2.4
23
81
9
65
47
9
15
28
1.76
8621--8662
21
2.0
21
100
0
84
33
28
19
19
1.96
17773--17807
11
3.2
11
91
0
61
0
2
17
80
0.84
18943--18969
14
1.9
14
100
0
54
81
0
18
0
0.69
19010--19043
15
2.2
16
89
5
52
38
11
14
35
1.83
21057--21102
14
3.1
15
84
12
51
47
6
10
34
1.64
21057--21091
16
2.2
16
90
10
54
54
5
8
31
1.54
28704--28746
22
1.9
23
95
4
79
46
9
13
30
1.75
31865--31908
22
2.0
21
86
4
61
27
50
15
6
1.70
35224--35263
15
2.6
16
88
4
55
12
10
15
62
1.54
43212--43303
37
2.5
35
81
10
103
19
14
15
51
1.77
43296--43363
30
2.3
30
80
10
77
13
23
20
42
1.87
43370--43494
35
3.7
33
76
9
119
20
19
20
40
1.92
43895--44411
30
17.1
30
84
5
567
18
15
18
46
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53540--53626
42
2.1
42
82
4
104
12
48
19
19
1.80
62766--63152
163
2.4
160
86
4
542
31
19
18
30
1.96
63143--63204
31
2.0
32
87
9
92
24
27
24
24
2.00
64956--64988
16
2.1
16
88
11
50
42
36
6
15
1.71
66836--66912
26
3.0
26
94
1
129
27
22
46
3
1.69

Tables:   1

The End!