genome.fa.s24016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024016.1 Corchorus olitorius cultivar O-4 contig24049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78380

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7538--7562	9	2.8	9	100	0	50	0	20	44	36	1.52
8417--8523	13	8.5	13	70	18	75	41	13	14	30	1.84
8446--8507	23	2.6	24	87	5	90	38	14	16	30	1.88
9118--9177	29	2.0	30	83	6	77	38	10	16	35	1.82
10816--10851	19	1.9	18	88	5	54	38	8	22	30	1.83
12623--12692	36	1.9	36	82	5	88	28	12	10	48	1.74
12727--12830	25	4.2	25	80	7	95	46	6	15	31	1.72
12728--12830	49	2.1	50	85	8	140	45	6	15	32	1.72
17930--17989	29	2.0	30	83	6	77	40	8	18	33	1.80
19367--19395	15	1.9	15	100	0	58	13	6	17	62	1.52
23784--23848	29	2.2	29	83	0	85	10	9	35	44	1.71
30701--30737	18	2.0	19	89	5	58	13	13	10	62	1.55
32915--33226	153	2.0	158	88	3	472	25	16	15	43	1.86
36641--36715	35	2.1	35	97	0	141	22	17	18	41	1.90
36757--36788	16	2.0	16	93	0	55	53	0	0	46	1.00
36741--36793	19	2.8	19	82	8	63	50	0	0	49	1.00
36765--36814	25	1.9	27	88	8	77	54	4	0	42	1.19
36909--36943	18	1.9	18	94	0	61	28	8	11	51	1.67
54918--54979	22	2.9	21	83	9	63	8	6	6	79	1.07
54933--54968	12	3.0	12	91	0	54	5	2	8	83	0.89
62342--62377	18	2.0	18	100	0	72	50	5	22	22	1.70
62625--62660	18	2.0	18	100	0	72	50	5	22	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63043--63117	28	2.7	28	86	8	100	37	25	17	20	1.94
63585--64077	50	9.8	50	93	1	779	28	12	27	31	1.93
65785--65936	76	2.0	76	79	7	166	18	29	28	23	1.98
66830--66979	50	3.0	50	92	0	246	37	14	15	32	1.88
67597--67636	18	2.2	18	86	4	53	10	0	7	82	0.84
68475--68618	76	1.9	74	83	9	184	31	16	10	40	1.82
73173--73205	16	2.1	16	94	0	57	39	12	9	39	1.74
74548--74685	29	4.6	30	90	2	208	55	5	22	17	1.61
75324--75361	14	2.7	15	88	12	62	7	0	36	55	1.29
76380--76415	18	2.0	18	100	0	72	50	5	22	22	1.70
77299--77385	42	2.1	42	91	0	138	20	21	9	48	1.77

Tables:   1

The End!