Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024017.1 Corchorus olitorius cultivar O-4 contig24050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3450
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:2325 original size:15 final size:15

Alignment explanation


    Indices: 2305--2339  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2295 ACAACATTAT

                           
       2305 TGCATGGCATCTCAC
          1 TGCATGGCATCTCAC

                           
       2320 TGCATGGCATCTCAC
          1 TGCATGGCATCTCAC

                 
       2335 TGCAT
          1 TGCAT

       2340 TTGCAGTAGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29


Consensus pattern (15 bp):   
TGCATGGCATCTCAC
Done.