Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024020.1 Corchorus olitorius cultivar O-4 contig24053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27683

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4101--4185
32
2.6
32
74
9
75
17
49
23
9
1.76
4423--4505
21
3.9
21
79
1
67
19
43
20
16
1.88
7736--7775
15
2.6
16
88
4
55
15
10
12
62
1.54
8284--8404
60
2.0
60
88
0
179
36
13
17
33
1.88
9658--9737
33
2.3
33
81
12
90
25
12
43
18
1.85
13858--14099
33
7.8
28
76
16
153
35
15
16
33
1.90
13858--14066
62
3.3
62
85
5
262
35
15
15
33
1.89
23881--23933
21
2.5
22
85
14
83
33
11
3
50
1.56
26035--26097
32
2.0
32
100
0
126
33
0
15
50
1.45
27650--27683
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!