genome.fa.s24024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024024.1 Corchorus olitorius cultivar O-4 contig24057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96368

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8261--8304	16	2.8	16	82	0	61	36	38	15	9	1.80
9101--9147	13	3.8	12	78	13	51	40	0	4	55	1.19
9315--9371	16	3.6	16	72	9	62	36	40	15	7	1.75
11649--11697	22	2.2	23	78	7	57	26	30	18	24	1.98
12548--12593	22	2.1	22	95	0	83	69	6	4	19	1.28
12595--12694	30	3.2	30	64	27	71	64	8	11	17	1.49
12570--12701	65	2.0	65	98	0	255	63	7	12	15	1.50
12901--12951	25	2.0	25	100	0	102	62	11	21	3	1.45
14556--14582	2	13.5	2	100	0	54	48	0	0	51	1.00
28839--29379	22	25.2	21	68	13	239	35	16	10	37	1.83
28889--28977	45	2.0	44	82	8	108	38	14	12	34	1.84
29027--29301	126	2.1	129	79	4	297	34	15	9	40	1.80
29263--29346	42	2.0	42	81	4	98	33	19	9	38	1.84
29393--29587	22	8.9	23	67	12	81	34	13	9	42	1.77
29685--29746	22	2.8	22	82	0	88	46	16	6	30	1.72
29759--29818	22	2.7	22	80	10	68	35	16	10	38	1.82
29836--30035	22	9.0	22	71	13	99	39	18	9	33	1.83
29901--30000	44	2.3	43	86	5	146	34	18	13	35	1.89
29917--30010	44	2.1	44	82	3	109	38	19	10	31	1.86
30200--30237	19	2.0	20	85	15	53	63	2	5	28	1.30
31257--31290	2	16.5	2	87	6	50	47	0	5	47	1.26
33666--33739	37	2.0	37	97	0	139	29	13	17	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34482--34526	22	2.0	23	87	12	67	2	22	0	75	0.91
34488--34522	15	2.3	16	90	9	56	0	22	0	77	0.78
39553--39657	31	3.3	31	78	4	102	19	10	7	62	1.50
44254--44320	15	4.7	15	66	17	52	49	17	1	31	1.56
45444--45491	18	2.7	18	100	0	96	31	37	18	12	1.88
45608--45681	29	2.5	29	77	4	76	39	21	9	29	1.85
47256--47314	26	2.2	28	81	6	77	23	22	22	32	1.98
64456--64504	25	2.0	24	88	4	71	34	14	40	10	1.79
67831--67882	19	2.8	19	72	13	54	50	0	1	48	1.12
80688--80713	13	2.0	13	100	0	52	15	0	30	53	1.42
82428--82479	22	2.4	22	96	0	95	21	30	11	36	1.89
86561--86605	18	2.5	18	100	0	90	33	15	13	37	1.86
86845--86882	4	9.8	4	83	16	53	52	21	0	26	1.47
87035--87091	25	2.3	25	100	0	114	28	12	17	42	1.85
87535--87589	21	2.6	21	85	0	74	16	21	45	16	1.85
90736--90808	28	2.6	28	84	2	94	41	28	15	15	1.87
90736--90864	27	4.7	27	80	7	109	37	27	17	17	1.92
91113--91234	50	2.4	50	88	2	172	26	26	11	36	1.90
91140--91247	50	2.1	51	94	3	191	29	25	11	33	1.91
91259--91491	50	4.7	50	92	2	369	30	14	27	28	1.95
92166--92319	48	3.1	48	85	2	209	38	11	17	31	1.86
92884--92951	5	13.6	5	75	16	61	16	2	16	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92884--92953	24	3.1	23	82	17	94	15	2	15	65	1.38
94875--94906	15	2.1	16	88	11	50	62	12	12	12	1.55

Tables:   1

The End!