Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024026.1 Corchorus olitorius cultivar O-4 contig24059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2664
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2148 original size:17 final size:17

Alignment explanation


    Indices: 2126--2159  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2116 TTTTCTTCAG

                             
       2126 ATTAGTCTATTTTCCTT
          1 ATTAGTCTATTTTCCTT

                             
       2143 ATTAGTCTATTTTCCTT
          1 ATTAGTCTATTTTCCTT

       2160 CCCCTGGCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59


Consensus pattern (17 bp):   
ATTAGTCTATTTTCCTT
Done.