Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024027.1 Corchorus olitorius cultivar O-4 contig24060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4905
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:3571 original size:26 final size:26

Alignment explanation


    Indices: 3535--3586  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3525 GAAAAAATTA

                                      
       3535 TGGCATATTTTAATGCATGTAAACTC
          1 TGGCATATTTTAATGCATGTAAACTC

                                      
       3561 TGGCATATTTTAATGCATGTAAACTC
          1 TGGCATATTTTAATGCATGTAAACTC

       3587 CCTATTAGAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38


Consensus pattern (26 bp):   
TGGCATATTTTAATGCATGTAAACTC
Done.