Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024032.1 Corchorus olitorius cultivar O-4 contig24065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8956
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29


Found at i:6199 original size:26 final size:26

Alignment explanation


    Indices: 6170--6228  Score: 68
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       6160 AATGCAATGC

                                       
       6170 ATGCAAACA-AAA-AGAAAATGAAAAA
          1 ATGCAAACATAAACA-AAAATGAAAAA

                    *             *    
       6195 TATGCAAATATAAACAAAAATGCAAAA
          1 -ATGCAAACATAAACAAAAATGAAAAA

                   
       6222 ATGCAAA
          1 ATGCAAA

       6229 TTTTTTTTAC


Statistics
Matches: 29,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  26   15  0.52
  27   13  0.45
  28    1  0.03

ACGTcount: A:0.66, C:0.10, G:0.10, T:0.14


Consensus pattern (26 bp):   
ATGCAAACATAAACAAAAATGAAAAA
Done.