Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024035.1 Corchorus olitorius cultivar O-4 contig24068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1981
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:676 original size:24 final size:24

Alignment explanation


    Indices: 649--694  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        639 TGCGTCATAT

                    *       *       
        649 AAAAAAAAGAGTCTTGCGTTTTTG
          1 AAAAAAAAAAGTCTTGAGTTTTTG

                        *         
        673 AAAAAAAAAAGTTTTGAGTTTT
          1 AAAAAAAAAAGTCTTGAGTTTT

        695 GCGTCATAAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.43, C:0.04, G:0.17, T:0.35


Consensus pattern (24 bp):   
AAAAAAAAAAGTCTTGAGTTTTTG

Found at i:743 original size:28 final size:27

Alignment explanation


    Indices: 674--749  Score: 98
    Period size: 28  Copynumber: 2.7  Consensus size: 27

        664 GCGTTTTTGA

                          **            
        674 AAAAAAAAAGTTTTGAGTTTTGCGTCAT
          1 AAAAAAAAA-TTTTTTGTTTTGCGTCAT

                                        
        702 AAAAAAAAATTTTTTGTTTCTGCGTCAT
          1 AAAAAAAAATTTTTTGTTT-TGCGTCAT

                   *       *    
        730 AAAAAAATATTTTTTCTTTT
          1 AAAAAAAAATTTTTTGTTTT

        750 ATTTTCTGTT


Statistics
Matches: 43,  Mismatches: 4, Indels: 3
        0.86            0.08        0.06

Matches are distributed among these distances:
  27    9  0.21
  28   34  0.79

ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43


Consensus pattern (27 bp):   
AAAAAAAAATTTTTTGTTTTGCGTCAT
Done.