Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024040.1 Corchorus olitorius cultivar O-4 contig24073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34239

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1019--1113
41
2.3
41
87
0
127
47
13
14
24
1.81
13036--13090
25
2.2
24
90
3
83
36
14
20
29
1.92
13043--13090
12
3.9
12
88
2
69
37
12
22
27
1.90
14078--14113
10
3.6
10
84
0
54
33
11
19
36
1.87
14614--14661
8
6.2
8
79
18
57
37
2
0
60
1.09
14613--14654
14
3.0
14
86
13
68
35
0
0
64
0.94
14613--14661
22
2.2
22
89
7
73
36
2
0
61
1.08
14613--14652
6
7.0
6
78
21
50
35
0
0
65
0.93
14968--15006
20
2.0
20
89
0
60
0
15
0
84
0.62
14974--15001
9
3.1
9
100
0
56
0
10
0
89
0.49
17942--17984
2
21.5
2
95
0
77
2
46
0
51
1.13
17984--18011
2
14.0
2
100
0
56
50
0
0
50
1.00
19057--19119
2
31.0
2
78
9
65
47
7
0
44
1.32
19948--19975
14
2.0
14
100
0
56
35
21
7
35
1.81

Tables:   1

The End!