Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024042.1 Corchorus olitorius cultivar O-4 contig24075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34818

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2115--2146
16
2.0
16
100
0
64
37
18
18
25
1.94
5665--5820
69
2.3
69
85
1
197
25
23
19
32
1.98
5840--6141
47
6.4
47
85
1
338
20
24
17
37
1.94
6221--6275
3
18.7
3
94
3
94
69
1
0
29
0.99
6426--6464
13
3.0
13
100
0
78
30
15
46
7
1.74
7873--7915
18
2.4
18
96
3
79
48
18
4
27
1.68
10267--10302
17
2.1
17
100
0
72
16
11
11
61
1.57
13457--13495
15
2.7
15
88
4
53
0
23
0
76
0.78
15504--15563
24
2.5
24
91
0
102
46
26
15
11
1.79
17761--17862
48
2.1
48
92
0
177
38
9
18
33
1.84
21502--21545
19
2.2
20
85
14
65
36
4
11
47
1.60
21768--22090
43
7.7
43
85
4
442
40
27
9
21
1.85
21768--22096
84
3.9
84
89
4
511
41
27
10
21
1.85
21768--22096
125
2.6
122
85
8
453
41
27
10
21
1.85
34480--34757
43
6.6
43
86
3
375
40
26
9
23
1.85
34480--34757
84
3.3
84
90
1
412
40
26
9
23
1.85
34484--34757
127
2.2
126
87
4
399
41
26
9
22
1.84

Tables:   1

The End!