Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024046.1 Corchorus olitorius cultivar O-4 contig24079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100298

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
122--157
19
1.9
18
88
5
54
41
8
22
27
1.82
2654--2683
12
2.5
12
94
0
51
16
30
10
43
1.81
2931--2995
26
2.9
21
75
20
76
30
3
20
46
1.66
3165--4599
529
2.8
517
95
2
2543
32
16
14
36
1.89
9577--9618
14
2.9
14
85
3
57
42
0
23
33
1.55
10093--10186
26
3.7
26
80
5
95
12
12
15
58
1.63
10198--10243
20
2.4
19
79
10
58
21
4
17
56
1.58
11012--11050
19
2.0
20
85
5
53
66
12
0
20
1.24
11065--11231
51
3.2
52
91
2
264
30
14
16
37
1.90
11065--11253
103
1.8
104
83
1
254
32
15
14
37
1.89
18403--18459
30
1.9
30
85
7
80
29
17
8
43
1.79
19864--19940
38
2.0
38
100
0
154
40
20
10
28
1.86
31300--31392
46
2.0
45
87
6
134
43
13
21
21
1.87
32135--32183
25
2.0
25
100
0
98
32
12
32
22
1.91
34013--34121
37
2.9
37
94
0
200
19
7
30
43
1.78
38885--38972
20
4.4
20
97
0
158
6
30
40
21
1.79
39893--39953
21
2.8
20
83
14
61
39
19
8
32
1.81
44935--44986
24
2.2
23
86
10
70
34
13
7
44
1.72
45330--45371
15
2.7
15
92
3
66
64
14
9
11
1.50
52346--52513
38
4.4
38
92
0
246
29
6
21
42
1.78
58263--58314
2
27.0
2
80
7
63
46
1
3
48
1.31
58263--58308
17
2.7
17
86
6
67
47
2
2
47
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62144--62193
24
2.0
25
92
3
84
40
6
16
38
1.73
65545--65589
23
2.0
23
100
0
90
46
13
13
26
1.80
68121--68223
39
2.7
39
87
4
138
26
18
7
47
1.75
70985--71054
27
2.6
27
86
0
95
37
22
18
21
1.94
70985--71062
27
2.9
26
84
3
93
34
21
20
23
1.97
71017--71076
27
2.2
27
82
5
68
33
28
20
18
1.96
88431--88501
34
2.1
34
91
0
115
50
7
14
28
1.68
92633--93592
478
2.0
478
98
0
1866
31
24
17
26
1.97
96574--96629
25
2.1
27
83
6
71
32
0
1
66
1.03
96647--96681
18
1.9
18
94
0
61
37
2
11
48
1.54
97992--98058
19
3.6
18
82
13
82
85
8
5
0
0.75
97992--98058
13
5.4
12
83
13
75
85
8
5
0
0.75
97990--98058
27
2.7
26
85
12
97
84
10
5
0
0.78
97990--98046
6
9.2
6
80
14
62
82
12
5
0
0.82
98874--98943
28
2.5
28
77
13
72
37
15
10
37
1.81
99425--99468
14
3.4
12
84
9
52
31
0
11
56
1.35

Tables:   1

The End!