Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024047.1 Corchorus olitorius cultivar O-4 contig24080, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2522
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33


Found at i:362 original size:22 final size:21

Alignment explanation


    Indices: 310--363  Score: 60
    Period size: 19  Copynumber: 2.6  Consensus size: 21

        300 TGCTTCTCGA

                                  
        310 AATAATTCTTC-AATGATCTTC
          1 AATAA-TCTTCAAATGATCTTC

                          *      
        331 -A-AATCTTCAAATTATCTTC
          1 AATAATCTTCAAATGATCTTC

                          
        350 AATAAGTCTTCAAA
          1 AATAA-TCTTCAAA

        364 CACGAACTTC


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    5  0.18
  19   11  0.39
  20    2  0.07
  21    2  0.07
  22    8  0.29

ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39


Consensus pattern (21 bp):   
AATAATCTTCAAATGATCTTC

Found at i:1219 original size:17 final size:17

Alignment explanation


    Indices: 1197--1229  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1187 CTCCTCTATC

                     *       
       1197 ATGAAAACACTTTTTTT
          1 ATGAAAACAATTTTTTT

                            
       1214 ATGAAAACAATTTTTT
          1 ATGAAAACAATTTTTT

       1230 AATTACCCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45


Consensus pattern (17 bp):   
ATGAAAACAATTTTTTT

Done.