Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024053.1 Corchorus olitorius cultivar O-4 contig24086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25922

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
542--581
15
2.6
16
88
4
55
62
12
10
15
1.54
13325--13372
11
4.7
11
80
12
50
39
10
20
29
1.86
14753--14794
15
2.7
15
96
3
75
11
7
14
66
1.43
19249--19296
11
4.7
11
80
12
50
39
10
20
29
1.86
20678--20719
15
2.7
15
96
3
75
11
7
14
66
1.43
23651--23977
50
6.5
50
95
0
582
34
11
29
24
1.90
23662--23791
23
5.3
23
64
17
73
34
12
32
20
1.90
24197--24294
28
3.5
28
98
0
187
13
20
20
45
1.84
24306--24333
14
2.0
14
100
0
56
35
14
0
50
1.43
24355--24379
13
1.9
13
100
0
50
20
0
0
80
0.72

Tables:   1

The End!