Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024054.1 Corchorus olitorius cultivar O-4 contig24087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9987
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Found at i:1300 original size:40 final size:41
Alignment explanation
Indices: 1236--1332 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 41
1226 CTGTTGTTTG
* * *
1236 ATGCAATTTTGTCCCTGATCTAGG-ATCTTATTTT-TGATTT
1 ATGCAATTTGGTCCCTGATCTAGGAAT-GTATTTTCTGATTA
* * *
1276 ATGCAATTTGGTCTCTTATTTAGGAATGTATTTTCTGATTA
1 ATGCAATTTGGTCCCTGATCTAGGAATGTATTTTCTGATTA
* *
1317 AAGCAATTTGATCCCT
1 ATGCAATTTGGTCCCT
1333 TTCGCTTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
40 26 0.57
41 20 0.43
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.46
Consensus pattern (41 bp):
ATGCAATTTGGTCCCTGATCTAGGAATGTATTTTCTGATTA
Found at i:3405 original size:40 final size:41
Alignment explanation
Indices: 3333--3423 Score: 105
Period size: 40 Copynumber: 2.2 Consensus size: 41
3323 ATGTTGTTTG
* * *
3333 ATGCAATTTTGTCCCTGATCTAGGATCTTATTTT-TGATTT
1 ATGCAATTTGGTCCCTGATCTAGGATCGTATTTTCTGATTA
* *
3373 ATGCAATTTGGTCCCTTATTTAGGAAT-GTATTTTCTGATTA
1 ATGCAATTTGGTCCCTGATCTAGG-ATCGTATTTTCTGATTA
*
3414 ACGCAATTTG
1 ATGCAATTTG
3424 ATCACTTTCG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
40 27 0.63
41 16 0.37
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.46
Consensus pattern (41 bp):
ATGCAATTTGGTCCCTGATCTAGGATCGTATTTTCTGATTA
Found at i:4798 original size:40 final size:41
Alignment explanation
Indices: 4751--4848 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 41
4741 CTGTTGTTTG
*
4751 ATGCAATTTTGT-CCTTGATCTAGG-ATCTTATTTT-TGATTT
1 ATGCAATTTGGTCCCTT-ATCTAGGAAT-TTATTTTCTGATTT
* *
4791 ATGCAATTTGGTCCCTTATTTAGGAATTTATTTTCTGATTA
1 ATGCAATTTGGTCCCTTATCTAGGAATTTATTTTCTGATTT
** *
4832 ACACAATTTGATCCCTT
1 ATGCAATTTGGTCCCTT
4849 TCGTTTTTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 24 0.49
41 25 0.51
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.48
Consensus pattern (41 bp):
ATGCAATTTGGTCCCTTATCTAGGAATTTATTTTCTGATTT
Found at i:4844 original size:711 final size:705
Alignment explanation
Indices: 1844--5552 Score: 5801
Period size: 705 Copynumber: 5.2 Consensus size: 705
1834 CTCAATTTCA
* * * *
1844 GTTAATTAATTCACATAAAGACAATTACTGGTTTCCGTGTTCAACATGGTCTTTGACTTGGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
* *
1909 CTATCTGTTGTTTGATACAATTTTGTCACTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
*
1974 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTAGATTCATCC
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
* *
2039 TCTTTATTCCTTCTTGTTGCTTTAACCAGTTTCCTGCCAAAAAGATATATAAACACAAAAATGGA
196 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
* ** * * *
2104 GGGGTTAGTTTCAGGTTACTAAGAGCAATTATCTAGTAAGTTCAGATTCAAATTCCAAACGGTCA
261 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGTCA
* * * *
2169 AAATAAGGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAGGCTAATCCGACGGTGGATGAGG
326 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
* * * *
2234 CAAATCGGAAGGGAAATCATGGTTCGGTTAAGACCATGTTTCATTAAGTTGCGGGCTCGGGATTC
391 CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTCGGGATTC
* * * *
2299 AACAACAAAGGTTGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAAATTTCGGTGACCA
456 AAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGACCA
* * *
2364 ACTAACAGTGATCGGAGGTGTGGCGCGGCAGAGAGATTTATGGAGGCGGCGGCGGCGCTGACAGC
521 ACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCAT---GGTGGCGGCGGCGCTGACAGC
* * * * * *
2429 TAGGGCTTTGAAGAAGAAGAAAGACTTAATGTTGAAAAAGAGAGGGAACCCTTTTATACTTAA-G
583 TAGGGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATAC-TAAGG
* *
2493 TAAGATTTCTAAGCTTTTCAATTAAGCCCTCAATTTCATGCATTTAAATCCCATAAGTT
647 TAAGATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
* * *
2552 GTTAATTAATTCCCATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTGTCTAATTTAGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
* *
2617 CTATCTGTTGTTTGATGAAATTTTGTCCATGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
*
2682 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCACTTTTTGATTCATCC
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
* * * * *
2747 TTTTTATTCCTTCTTTTTGCTTTAACCAGTTTCCT-TAAAAAAAAGATATAAACACAAAAATGGA
196 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
* *
2811 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCTTCTAGTAAGTTCAGATTAAAATTCCCATCGGTCA
261 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGTCA
* * *
2876 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAAGCCAACAGTGGAGGAGG
326 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
* *
2941 CAAATCGGAAGGGAAATCTTTGTTCGGTTAAGCCCCTGTTTTATCAAGTTGCGGGCTCGGGATTC
391 CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTCGGGATTC
* * * **
3006 AAGAACAAAGGTCAGGGACGGCTTCAGGGTGAAGAGGAGAAGAGATCTGGAGATTTTAGTGACCA
456 AAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGACCA
* * * *
3071 ACTAACGGTGATCGGAGGTGTGGCACGACAGAGAGATTCATGGTGGCGGTGGCGCAGACAGCTAG
521 ACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGTGGCGGCGGCGCTGACAGCTAG
* * * *
3136 GGTTTTGAAGACGAATAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTGTACTTAGGTAAG
586 GGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATACTAAGGTAAG
*
3201 ATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCA--TAACTCCCATAAGTT
651 ATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
* * *
3254 GTTAATTAATTCACATAAAGACAATTACTTATTTCCGTGTTCAACATGGTCTCAGATTTGGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
*
3319 CTATATGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
* *
3384 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCACTTTCGCTTTTTGATTCAACC
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
3449 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAAAGATATATAAACACAAAAATG
196 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGC--AAAAAAGATATATAAACACAAAAATG
* * *
3514 GAGGGGTTAGTTTCGGGTTAAGAAGAGCAATTATCTAGTAAGTTCAGATTCAAATTCCCATTGGT
259 GAGGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGT
*
3579 CAAAATAAAGTTGAAAGTGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGA
324 CAAAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGA
* *
3644 GGCAAATCGGAAGGGAAATCTTGGTTTGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTTGGGAT
389 GGCAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTCGGGAT
** * *
3709 TCAAGAATTGAGGTCGGGGACGGCTTCGGGGTGTAGAGCAGAAGAGATCTGGAGATTTCGGTGAC
454 TCAAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGAC
* * *
3774 CAACTAACGGTTATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGTGGCGGTGGCGCTGACTGCT
519 CAACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGTGGCGGCGGCGCTGACAGCT
*
3839 AGGGTTTTGAAGACGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATACCT-AGGT
584 AGGGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATA-CTAAGGT
* *
3903 AAGATTTCTAATCTTTTCAATAAAGTCCTCAATTTCATGCATTTAAATCACATAAGTT
648 AAGATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
* *
3961 GTTAATTAATTCACATAAAGACAATTACTTATTTCCGTGTTCAACATGGTCTCTGATTTGGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
* *
4026 CTATATGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATTCAATTTGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
4091 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
*
4156 TCTTTATTCCTTCTTATTGCTTTAATCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
196 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
* * *
4221 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTTGTAAGTTCAGATTCAGATTCCCAACGGTCA
261 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGTCA
** * * * *
4286 AAATGGAGTTGAAAGAGGGAGGAAATTCGTAGCTTGAAGCCAAGCCAATCCGACGGTGGAGAAGG
326 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
* * * *
4351 CAAATCGGAAGGAAAATCTTGGTTCGATTAAGACCCTGTTTCATGAAGTTGCGGGCTCGGGATTC
391 CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTCGGGATTC
* * * * *
4416 AAGAATAGAGGTCGGTGACGGCTTCGGGGTGCAGAGGAGAGGTGATCTGGAGATTTCGGTGACCA
456 AAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGACCA
* * * *
4481 TCTAATGATGATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGAGGCGGCGGCGGCGGCGCTGAC
521 ACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCAT------GGTGGCGGCGGCGCTGAC
* * ** * * *
4546 AACTAGGGTCTACAAGAAGAATAAAGTCTGAAGGTTGAATAAGAGAATGAACCCTTTTATACTAA
580 AGCTAGGGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATACTAA
* *
4611 GGTAAGATTTCTAATCTTTTCACTTAAGTCCTTAATTTCATGCATTTAAATCCCATAAGTT
645 GGTAAGATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
*
4672 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTTATTTAGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
*
4737 CTATCTGTTGTTTGATGCAATTTTGTCCTTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
* * *
4802 TCCCTTATTTAGGAATTTATTTTCTGATTAACACAATTTGATCCCTTTCGTTTTTTGATTCATCC
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
* * *
4867 TTTTTATTCCTTCTTATTGTTTTAACCAGTTTCCTGCAAAAAAGATATATAAAAACAAAAATGGA
196 TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
* * *
4932 GGGGTTATTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCGCATCAGTCA
261 GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGTCA
4997 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
326 AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
* *
5062 CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTATTT-ATTCAAGTTGCGGGCTCAGGATT
391 CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCA-TCAAGTTGCGGGCTCGGGATT
* * *
5126 CAAGAACAGAGGTCGGCGACGGCTTCGCGGTGAAGAGGAGAAGAGATCTGGAGATTTCGATGACC
455 CAAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGACC
* ** *
5191 AACTAACGGTGATCGGAGGTGTGGCACTACAGAGAGATTCATGGTGGCGGAGGCGCTGACAGCTA
520 AACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGTGGCGGCGGCGCTGACAGCTA
* *
5256 GGGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAAAAGGAACCCTTTTATACTTAGGTAA
585 GGGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATACTAAGGTAA
* * *
5321 GAATTCTAATCTTTTTAATTAAGTCCTCAATTTCATGCATTTAAATACCATAAGTT
650 GATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
*
5377 GTTAATTAATTCCCATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
1 GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
* * * * *
5442 CTCTCTGTTGTTTGATACAATTTTGTCCCTGATCTTGGATCTTATTTTTGATTTATTCAATTCGG
66 CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
* *
5507 TCCCTTATTTTGGAATGTATTTTTTGATTAACGCAATTTGATCCCT
131 TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCT
5553 GATTTAGGAT
Statistics
Matches: 2749, Mismatches: 237, Indels: 33
0.91 0.08 0.01
Matches are distributed among these distances:
702 230 0.08
703 2 0.00
704 109 0.04
705 1013 0.37
706 2 0.00
707 534 0.19
708 215 0.08
710 3 0.00
711 641 0.23
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (705 bp):
GTTAATTAATTCACATAAAGACAATTACTTGTTTCCGTGTTCAACATGGTCTCTGATTTAGAATA
CTATCTGTTGTTTGATGCAATTTTGTCCCTGATCTAGGATCTTATTTTTGATTTATGCAATTTGG
TCCCTTATTTAGGAATGTATTTTCTGATTAACGCAATTTGATCCCTTTCGCTTTTTGATTCATCC
TCTTTATTCCTTCTTATTGCTTTAACCAGTTTCCTGCAAAAAAGATATATAAACACAAAAATGGA
GGGGTTAGTTTCGGGTTAGGAAGAGCAATCATCTAGTAAGTTCAGATTCAAATTCCCATCGGTCA
AAATAAAGTTGAAAGAGGGAGGAAATACATATCTTGAAGCCAAGCCAATCCGACGGTGGAGGAGG
CAAATCGGAAGGGAAATCTTGGTTCGGTTAAGCCCCTGTTTCATCAAGTTGCGGGCTCGGGATTC
AAGAACAGAGGTCGGGGACGGCTTCGGGGTGAAGAGGAGAAGAGATCTGGAGATTTCGGTGACCA
ACTAACGGTGATCGGAGGTGTGGCGCGGCAGAGAGATTCATGGTGGCGGCGGCGCTGACAGCTAG
GGTTTTGAAGAAGAAGAAAGTCTGAAGGTTGAAGAAGAGAAGGAACCCTTTTATACTAAGGTAAG
ATTTCTAATCTTTTCAATTAAGTCCTCAATTTCATGCATTTAAATCCCATAAGTT
Found at i:6128 original size:17 final size:18
Alignment explanation
Indices: 6100--6133 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
6090 AAAATTTGAA
6100 GAAAAGTGAAAAAAAAAG
1 GAAAAGTGAAAAAAAAAG
6118 GAAAA-TGAAAAAAAAA
1 GAAAAGTGAAAAAAAAA
6134 ACGGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (18 bp):
GAAAAGTGAAAAAAAAAG
Found at i:6150 original size:20 final size:19
Alignment explanation
Indices: 6107--6150 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
6097 GAAGAAAAGT
*
6107 GAAAAAAAAAGGAAAATGA
1 GAAAAAAAAAGGAAAATCA
6126 -AAAAAAAAACGGAAAAATCA
1 GAAAAAAAAA-GG-AAAATCA
6146 GAAAA
1 GAAAA
6151 TTAAAAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 2 0.10
20 6 0.29
21 4 0.19
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.05
Consensus pattern (19 bp):
GAAAAAAAAAGGAAAATCA
Done.