Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024056.1 Corchorus olitorius cultivar O-4 contig24089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44443

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2196--2242
23
2.0
24
84
8
62
44
25
17
12
1.84
2408--2446
18
2.1
18
85
4
51
41
15
15
28
1.87
3598--3638
21
2.0
21
85
9
57
29
17
19
34
1.94
15392--15421
13
2.3
13
94
0
51
23
0
40
36
1.55
17982--18143
78
2.1
78
90
0
252
34
15
1
48
1.53
18466--18512
14
3.5
14
77
11
62
27
4
0
68
1.08
18345--18644
151
2.0
150
88
1
440
33
9
3
54
1.48
21161--21203
13
3.5
11
84
15
50
58
11
0
30
1.34
21160--21214
24
2.3
25
78
15
62
56
14
1
27
1.49
21236--21352
56
2.1
57
91
1
191
30
33
19
16
1.94
21439--21481
13
3.3
13
81
9
52
60
20
4
13
1.51
21448--21493
13
3.5
13
81
0
56
63
23
2
10
1.38
28791--28826
19
1.9
18
88
5
54
41
2
22
33
1.68
31867--31910
22
2.0
23
90
4
72
34
13
22
29
1.93
34681--34714
17
2.0
17
88
0
50
44
20
8
26
1.81

Tables:   1

The End!