Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024057.1 Corchorus olitorius cultivar O-4 contig24090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36851

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623--915
29
10.0
29
81
4
320
43
25
15
16
1.87
633--907
87
3.1
87
87
3
376
43
25
14
16
1.86
6238--6276
19
2.0
20
85
9
55
64
7
15
12
1.49
8136--8191
28
2.0
28
96
0
103
42
10
16
30
1.82
8974--9056
42
2.0
42
90
0
130
12
24
45
18
1.82
8984--9065
42
2.0
42
90
0
128
9
25
45
19
1.81
11881--11953
27
2.7
27
77
12
78
39
10
8
41
1.70
11890--11970
29
2.8
30
73
16
82
39
12
7
40
1.71
11881--11951
26
2.7
26
80
10
74
40
9
8
40
1.69
11883--11973
29
3.3
27
72
17
80
43
13
6
36
1.70
18925--18963
19
2.1
19
85
4
53
17
15
30
35
1.91
27378--27491
57
2.0
57
87
0
165
38
32
7
21
1.81
31058--31113
16
3.5
16
92
0
85
37
37
16
8
1.80
31173--31216
21
2.2
20
83
4
52
47
6
0
45
1.29
34584--34625
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!