Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024063.1 Corchorus olitorius cultivar O-4 contig24096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24500

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
460--493
3
12.0
3
87
12
54
67
0
0
32
0.91
567--706
25
5.7
23
78
7
82
19
26
28
25
1.99
545--683
50
2.8
50
82
4
156
20
27
27
25
1.99
592--706
50
2.3
50
87
3
160
18
26
30
25
1.98
4458--4830
50
7.4
50
79
7
362
42
2
15
40
1.60
4458--4821
102
3.6
101
85
5
459
42
2
15
39
1.61
4485--4830
152
2.3
151
80
8
389
41
2
15
40
1.61
5413--5862
46
9.7
46
80
7
432
19
26
15
37
1.92
5413--5851
184
2.4
182
84
6
553
19
26
15
38
1.92
5925--6149
49
4.6
49
87
2
285
14
23
21
40
1.89
5925--6147
97
2.3
97
85
3
288
13
23
21
41
1.89
7487--7534
25
1.9
25
100
0
96
25
25
12
37
1.91
11957--11994
9
4.2
9
100
0
76
13
0
52
34
1.40
13604--13633
15
2.1
15
93
6
53
66
0
0
33
0.92
14705--14747
14
3.1
14
81
18
63
4
16
0
79
0.90
19180--19234
22
2.5
22
100
0
110
16
43
29
10
1.82
20558--20598
21
2.0
21
85
9
57
48
29
0
21
1.50

Tables:   1

The End!