Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024065.1 Corchorus olitorius cultivar O-4 contig24098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20780

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
970--1050
33
2.5
33
81
4
83
23
9
22
44
1.82
1021--1095
37
2.0
37
85
10
100
34
6
18
40
1.77
1009--1105
37
2.8
32
74
18
88
29
8
20
41
1.81
1410--1478
36
1.9
36
85
5
95
27
20
20
31
1.97
2908--2996
21
4.2
21
95
2
153
28
21
23
26
1.99
4205--4270
21
3.1
21
89
4
98
24
46
21
7
1.76
4215--4295
21
3.9
20
84
7
99
19
46
22
11
1.81
7135--7159
13
1.9
13
100
0
50
32
20
8
40
1.81
9286--9317
15
2.1
15
100
0
64
21
31
34
12
1.91
9393--9432
15
2.6
15
84
4
53
65
12
5
17
1.44
15829--15878
21
2.3
22
82
3
66
76
16
6
2
1.08
16172--16210
15
2.6
15
88
8
53
66
12
7
12
1.43
16997--17023
10
2.7
10
100
0
54
29
0
37
33
1.58
19621--19645
11
2.3
11
100
0
50
64
28
0
8
1.22

Tables:   1

The End!