Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024066.1 Corchorus olitorius cultivar O-4 contig24099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5231
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:638 original size:13 final size:13

Alignment explanation


    Indices: 620--644  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        610 TAGATTAATG

                         
        620 GATGAATGCAAAT
          1 GATGAATGCAAAT

                        
        633 GATGAATGCAAA
          1 GATGAATGCAAA

        645 GTTCAATTAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.08, G:0.24, T:0.20


Consensus pattern (13 bp):   
GATGAATGCAAAT
Done.