Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024068.1 Corchorus olitorius cultivar O-4 contig24101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46957

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5439--5481
22
2.0
22
85
0
59
25
32
20
20
1.97
7217--7380
89
1.9
89
88
3
251
54
3
10
31
1.50
9359--9388
2
15.0
2
92
0
51
46
0
0
53
1.00
10603--10645
19
2.3
19
95
0
77
37
6
16
39
1.75
13581--13669
44
2.0
44
97
0
169
7
20
23
48
1.75
16030--16421
205
1.9
206
81
3
477
32
21
18
28
1.97
26501--26546
2
23.5
2
95
4
85
50
0
0
50
1.00
27593--27623
3
10.7
3
93
6
55
70
0
29
0
0.87
32116--32387
102
2.6
105
84
8
344
40
8
8
43
1.65
33330--33391
12
4.9
13
94
5
110
24
24
16
35
1.95
33330--33391
25
2.5
25
100
0
124
24
24
16
35
1.95
34780--34818
20
2.0
20
94
0
69
56
5
0
38
1.22
34858--35057
105
1.9
106
82
6
253
11
34
36
18
1.86
35174--35223
17
3.1
15
81
16
55
42
0
24
34
1.55
39584--39621
18
2.1
18
100
0
76
39
5
15
39
1.70
39777--39881
26
4.1
26
85
11
162
16
25
2
55
1.55
39788--39891
51
2.0
51
100
0
208
13
26
1
57
1.47
39865--39903
19
2.1
19
100
0
78
10
25
0
64
1.25
40695--40724
7
4.3
7
100
0
60
40
13
16
30
1.87
43144--43213
33
2.1
33
100
0
140
37
14
12
35
1.84
44282--45429
438
2.6
437
78
8
1164
43
13
13
30
1.82
46053--46094
20
2.3
19
84
12
52
50
7
19
23
1.72

Tables:   1

The End!