Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024069.1 Corchorus olitorius cultivar O-4 contig24102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46553
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Found at i:387 original size:25 final size:25
Alignment explanation
Indices: 327--393 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 25
317 TATATATTAT
**
327 TATAT-TTGTAATTATATATATCTAA
1 TATATATT-TAATTATATATATAAAA
352 TAT-TA-TT--TTATATATATAAAA
1 TATATATTTAATTATATATATAAAA
*
373 TATATATTTAATTATAAATAT
1 TATATATTTAATTATATATAT
394 TACTAAACGG
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
21 15 0.44
22 2 0.06
23 3 0.09
24 2 0.06
25 12 0.35
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (25 bp):
TATATATTTAATTATATATATAAAA
Found at i:1248 original size:31 final size:33
Alignment explanation
Indices: 1213--1274 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
1203 AAAACGGAGA
*
1213 AGAAAAGAATAAAAAAT-AA-AAAAAAAGTTTG
1 AGAAAAAAATAAAAAATCAAGAAAAAAAGTTTG
*
1244 AGAAAAAAATAATAAATCAAGTAAAAAAAGT
1 AGAAAAAAATAAAAAATCAAG-AAAAAAAGT
1275 AGTTGATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 15 0.58
32 2 0.08
34 9 0.35
ACGTcount: A:0.71, C:0.02, G:0.11, T:0.16
Consensus pattern (33 bp):
AGAAAAAAATAAAAAATCAAGAAAAAAAGTTTG
Found at i:7581 original size:436 final size:436
Alignment explanation
Indices: 6902--7856 Score: 1157
Period size: 436 Copynumber: 2.2 Consensus size: 436
6892 GATTCAAATA
* * * * * * *
6902 TCTATTAAAAGGTAATTTCATTATCTACAATTTTCATGAAAAACTCAAAAGGTAATTTTAATGTT
1 TCTATTAAAAAGAAATTTCATGATCTACAACTTTCATGAAAAACTTAAAAGCTAATTTTTATGTT
* * * * * * *
6967 TTGATTTTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCGGTCAATTTAATATCGTATAA
66 TTAATTCTAAAAAATGCTTCCGAAATTTGGTCGTTTCGATTGCCGGTCAATTTAATACCATATAA
*** * * *
7032 TTTTTTCTCCACATGTCCGATTGAAGTTATTAAAGTGTCGGTTAAAAGGTTATTGCATGATTACG
131 TTTTCGATCCACATGTCCAATTAAAGTTATTAAAGTGTCGGTTAAAAGGTTACTGCATGATTACG
* * * * *
7097 ACTTTCATGAAGGATCCGAAAGATAAATTTAATCTACGAGTTTCATGAATGGTTCAAATGTGAAT
196 ACTTTCATGAAGAACCCGAAAGATAAATTTAATCTACGAGTTTCATGAAGGGTTCAAAAGGGAAT
* * * *
7162 TTTTATGCTTCAAGATCTCCATTAACAAATATTTTCTTATATGGATTATTTATCAAATTG-CCCT
261 CTTTATGCTTCAAGATATCCATTAACAAATATTTTCTTATATGAATTAGTTATCAAA-TGACCCT
* *
7226 CATATTTTTCTACTTTATACTATTTAATCCTTTACAAATTCTATATTA-ATCTAAC-GTTAAGAT
325 CATACTTTTCTACTTTATACTACTTAATCCTTTACAAATTCTATATTACATCTAACGGTTAAGAT
* * * *
7289 TTGTTTATTTATTCTTTATTCTATTTGTGCGATT-AAGTTGATTTATGTG
390 TTGTTTA-TT-TTCTTTATTCTATTTGTGCAATTAAAG-TAATTCAGGTG
** * *
7338 TCTATTTAAAAA-AAATTTCATGATCTACAACTTTCATGAAGGACTTTAAAGCAAATTTTTATGT
1 TCTA-TTAAAAAGAAATTTCATGATCTACAACTTTCATGAAAAACTTAAAAGCTAATTTTTATGT
* * ** *
7402 TTTAATTCAAAAAAATGCTTCCTAAATTTGGTCGTTTCGATTGTTGGTCTATTTAATACCATATA
65 TTTAATTCTAAAAAATGCTTCCGAAATTTGGTCGTTTCGATTGCCGGTCAATTTAATACCATATA
* *
7467 ATTTTCGATCCACATGTCCAATTAAAGTTATTCAAGTGTCGGTTAAAAGGTTACTGTATGATCTA
130 ATTTTCGATCCACATGTCCAATTAAAGTTATTAAAGTGTCGGTTAAAAGGTTACTGCATGAT-TA
* *
7532 CGACTTTCATGAAGAACCCGAAAG-TTAATTTGATCTACGAGTTTCATGAAGGGTTCAAAAGGGA
194 CGACTTTCATGAAGAACCCGAAAGATAAATTTAATCTACGAGTTTCATGAAGGGTTCAAAAGGGA
* * * *
7596 ATCTTTATGTTTCAAGATATCTATTAAGAAATATTTTCTTATTTGAATTAGTTATCAAATGACCC
259 ATCTTTATGCTTCAAGATATCCATTAACAAATATTTTCTTATATGAATTAGTTATCAAATGACCC
* * * * * *
7661 TCATACTTTTCTATTTTATGCTACTTAGTCCTTTACAAATTCTATCTTACTCGATTTAACGGTTC
324 TCATACTTTTCTACTTTATACTACTTAATCCTTTACAAATTCTATATTA--C-ATCTAACGGTTA
** * * *
7726 ATTTTTTTTTATTTTCTTTGTTCTATTTGTTCAATTAAAGTAATTCAGGTG
386 AGATTTGTTTATTTTCTTTATTCTATTTGTGCAATTAAAGTAATTCAGGTG
* * * * * *
7777 TCTATTAAAAAGTAATTTTATGATCTACAACTTTCTTGAAATACTCAGAAGCTAATTTTTATGTT
1 TCTATTAAAAAGAAATTTCATGATCTACAACTTTCATGAAAAACTTAAAAGCTAATTTTTATGTT
*
7842 TCAATTCTAAAAAAT
66 TTAATTCTAAAAAAT
7857 ACTTTTGAAA
Statistics
Matches: 435, Mismatches: 74, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
435 2 0.00
436 285 0.66
437 30 0.07
438 7 0.02
439 89 0.20
440 11 0.03
441 11 0.03
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (436 bp):
TCTATTAAAAAGAAATTTCATGATCTACAACTTTCATGAAAAACTTAAAAGCTAATTTTTATGTT
TTAATTCTAAAAAATGCTTCCGAAATTTGGTCGTTTCGATTGCCGGTCAATTTAATACCATATAA
TTTTCGATCCACATGTCCAATTAAAGTTATTAAAGTGTCGGTTAAAAGGTTACTGCATGATTACG
ACTTTCATGAAGAACCCGAAAGATAAATTTAATCTACGAGTTTCATGAAGGGTTCAAAAGGGAAT
CTTTATGCTTCAAGATATCCATTAACAAATATTTTCTTATATGAATTAGTTATCAAATGACCCTC
ATACTTTTCTACTTTATACTACTTAATCCTTTACAAATTCTATATTACATCTAACGGTTAAGATT
TGTTTATTTTCTTTATTCTATTTGTGCAATTAAAGTAATTCAGGTG
Found at i:8344 original size:16 final size:16
Alignment explanation
Indices: 8302--8344 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
8292 AAGTCAACGT
*
8302 CCCGAACCCGAAATTA
1 CCCGAACCCGAAAATA
*
8318 CTCGAGA-CCGAAAATA
1 CCCGA-ACCCGAAAATA
8334 CCCGAACCCGA
1 CCCGAACCCGA
8345 CGCAGCCCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.37, C:0.37, G:0.16, T:0.09
Consensus pattern (16 bp):
CCCGAACCCGAAAATA
Found at i:8362 original size:22 final size:23
Alignment explanation
Indices: 8334--8388 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
8324 ACCGAAAATA
* *
8334 CCCGAACCCGACGC-AGCCCGAG
1 CCCGAACCCGACCCAAGACCGAG
8356 CCCGAACCCGACCCAAGACCGAG
1 CCCGAACCCGACCCAAGACCGAG
*
8379 ACCGAACCCG
1 CCCGAACCCG
8389 GCCCGATCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 13 0.45
23 16 0.55
ACGTcount: A:0.27, C:0.49, G:0.24, T:0.00
Consensus pattern (23 bp):
CCCGAACCCGACCCAAGACCGAG
Found at i:10275 original size:29 final size:29
Alignment explanation
Indices: 10225--10281 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
10215 TCAATCTTTA
** *
10225 TATATATTGATAATAATGTTATATTATAT
1 TATATATTGATAATAAACTTATAATATAT
10254 TATATATT-ATCAATAAACTTATAATATA
1 TATATATTGAT-AATAAACTTATAATATA
10282 AAAGATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (29 bp):
TATATATTGATAATAAACTTATAATATAT
Found at i:10458 original size:32 final size:33
Alignment explanation
Indices: 10420--10493 Score: 107
Period size: 32 Copynumber: 2.3 Consensus size: 33
10410 CTACCCGAGA
10420 CTGAACCCGACATAACCCGAGCCCGAAAATA-C
1 CTGAACCCGACATAACCCGAGCCCGAAAATATC
** *
10452 CTGAACCTAACTTAACCCGAGCCCGAAAATATC
1 CTGAACCCGACATAACCCGAGCCCGAAAATATC
10485 C-GAACCCGA
1 CTGAACCCGA
10494 AAAAGCCTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
32 34 0.94
33 2 0.06
ACGTcount: A:0.36, C:0.36, G:0.15, T:0.12
Consensus pattern (33 bp):
CTGAACCCGACATAACCCGAGCCCGAAAATATC
Found at i:10492 original size:16 final size:16
Alignment explanation
Indices: 10434--10523 Score: 60
Period size: 16 Copynumber: 5.7 Consensus size: 16
10424 ACCCGACATA
*
10434 ACCCGAGCCCGAAAAT
1 ACCCGAACCCGAAAAT
* * **
10450 ACCTGAA-CCTAACTT
1 ACCCGAACCCGAAAAT
*
10465 AACCCGAGCCCGAAAAT
1 -ACCCGAACCCGAAAAT
*
10482 ATCCGAACCCGAAAA-
1 ACCCGAACCCGAAAAT
* *
10497 AGCCTGAACCC-AAAGT
1 A-CCCGAACCCGAAAAT
10513 ACCCGAACCCG
1 ACCCGAACCCG
10524 TCCGAACCCA
Statistics
Matches: 53, Mismatches: 16, Indels: 10
0.67 0.20 0.13
Matches are distributed among these distances:
15 17 0.32
16 31 0.58
17 5 0.09
ACGTcount: A:0.38, C:0.37, G:0.16, T:0.10
Consensus pattern (16 bp):
ACCCGAACCCGAAAAT
Found at i:12894 original size:2 final size:2
Alignment explanation
Indices: 12887--12946 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
12877 CAAGTACCTG
12887 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
12929 CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA
12947 GGTGCCAAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:20039 original size:34 final size:34
Alignment explanation
Indices: 19996--20062 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
19986 TGGAACTGTC
19996 ATAAAGTGCCTTTTGTTAAGTTAGGTAACTCTTA
1 ATAAAGTGCCTTTTGTTAAGTTAGGTAACTCTTA
20030 ATAAAGTGCCTTTTGTTAAGTTAGGTAACTCTT
1 ATAAAGTGCCTTTTGTTAAGTTAGGTAACTCTT
20063 GGACAACTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (34 bp):
ATAAAGTGCCTTTTGTTAAGTTAGGTAACTCTTA
Found at i:23652 original size:66 final size:66
Alignment explanation
Indices: 23545--23671 Score: 175
Period size: 66 Copynumber: 1.9 Consensus size: 66
23535 AGTAATTCTG
* *
23545 AACCTGATTTGAGTGTTGTTTGCAATGACATGAAATCTGTTTTAGATGTTGTTAGTGATGATACT
1 AACCTAATTTAAGTGTTGTTTGCAATGACATGAAATCTGTTTTAGATGTTGTTAGTGATGATACT
23610 A
66 A
** * * *
23611 AACCTAATTTAAGTGTTGTTTGTGATGACACT-AAATTTGTTTTAGGTGTTGTTTGTGATGA
1 AACCTAATTTAAGTGTTGTTTGCAATGACA-TGAAATCTGTTTTAGATGTTGTTAGTGATGA
23672 AACAAATTCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
66 52 0.98
67 1 0.02
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.43
Consensus pattern (66 bp):
AACCTAATTTAAGTGTTGTTTGCAATGACATGAAATCTGTTTTAGATGTTGTTAGTGATGATACT
A
Found at i:23660 original size:33 final size:33
Alignment explanation
Indices: 23557--23686 Score: 129
Period size: 33 Copynumber: 3.9 Consensus size: 33
23547 CCTGATTTGA
**
23557 GTGTTGTTTGCAATGACA-TGAAATCTGTTTTAG
1 GTGTTGTTTGTGATGACACT-AAATCTGTTTTAG
* * * * ** *
23590 ATGTTGTTAGTGATGATACTAAACCTAATTTAA
1 GTGTTGTTTGTGATGACACTAAATCTGTTTTAG
*
23623 GTGTTGTTTGTGATGACACTAAATTTGTTTTAG
1 GTGTTGTTTGTGATGACACTAAATCTGTTTTAG
*
23656 GTGTTGTTTGTGATGAAAC-AAATTCTGTTTT
1 GTGTTGTTTGTGATGACACTAAA-TCTGTTTT
23687 GGATGCTAAT
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
32 3 0.04
33 72 0.95
34 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.45
Consensus pattern (33 bp):
GTGTTGTTTGTGATGACACTAAATCTGTTTTAG
Found at i:28128 original size:21 final size:21
Alignment explanation
Indices: 28086--28305 Score: 205
Period size: 21 Copynumber: 10.6 Consensus size: 21
28076 GGTTCAAACG
* * * *
28086 TGGAAGAGTCTAATTCTAACA
1 TGGAAGAGGCTGATTTTGACA
*
28107 TGGAAGAGGCTGATTTCGACA
1 TGGAAGAGGCTGATTTTGACA
* *
28128 TGGAAGATGCTGATTTTGACGC
1 TGGAAGAGGCTGATTTTGAC-A
* *
28150 T-GAAGAGGCTTATTTTAACA
1 TGGAAGAGGCTGATTTTGACA
* * *
28170 T-G--GAGGCTTATTTGGACT
1 TGGAAGAGGCTGATTTTGACA
* ** *
28188 TTGTCGAGGCTGATTTAGACA
1 TGGAAGAGGCTGATTTTGACA
* *
28209 TGGAAGGGGCTTATTTTGACA
1 TGGAAGAGGCTGATTTTGACA
*
28230 TGGAAGAGGCTGGTTTTGACA
1 TGGAAGAGGCTGATTTTGACA
*
28251 TGGAAGAGGCTGATTATGACA
1 TGGAAGAGGCTGATTTTGACA
* *
28272 TTGAAGAGACTGATTTTGACA
1 TGGAAGAGGCTGATTTTGACA
28293 TGGAAGAGGCTGA
1 TGGAAGAGGCTGA
28306 AGTTCAAGGA
Statistics
Matches: 161, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.09
19 1 0.01
20 2 0.01
21 143 0.89
22 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.30
Consensus pattern (21 bp):
TGGAAGAGGCTGATTTTGACA
Found at i:30230 original size:34 final size:35
Alignment explanation
Indices: 30152--30243 Score: 141
Period size: 34 Copynumber: 2.6 Consensus size: 35
30142 AACTACTGGA
30152 TGATGGGATCTTTCCCTAAATTAAAACTTCTGAAAACT
1 TGATGGGATCTTTCCCT-AA--AAAACTTCTGAAAACT
*
30190 TGATGGGATCTTTCCCTAAAAAACTT-TGAAGACT
1 TGATGGGATCTTTCCCTAAAAAACTTCTGAAAACT
30224 TGATGGGATCTTTCCCTAAA
1 TGATGGGATCTTTCCCTAAA
30244 TTTAAAAACT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
34 27 0.51
35 7 0.13
37 2 0.04
38 17 0.32
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (35 bp):
TGATGGGATCTTTCCCTAAAAAACTTCTGAAAACT
Found at i:30355 original size:37 final size:39
Alignment explanation
Indices: 30305--30379 Score: 118
Period size: 37 Copynumber: 2.0 Consensus size: 39
30295 CTTGAACAAA
*
30305 CTTGATGGGATCTTTCCCTAA-TTAGAAAT-CTTGAAAG
1 CTTGATGGAATCTTTCCCTAATTTAGAAATCCTTGAAAG
*
30342 CTTGATGGAATCTTTCCCTAATTTTGAAATCCTTGAAA
1 CTTGATGGAATCTTTCCCTAATTTAGAAATCCTTGAAA
30380 AAAATACTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 20 0.59
38 7 0.21
39 7 0.21
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (39 bp):
CTTGATGGAATCTTTCCCTAATTTAGAAATCCTTGAAAG
Found at i:30438 original size:42 final size:41
Alignment explanation
Indices: 30152--30637 Score: 319
Period size: 42 Copynumber: 11.8 Consensus size: 41
30142 AACTACTGGA
* ***
30152 TGATGGGATCTTTCCCTAAATT-AAAACTTCTGAAA-AC-T
1 TGATGGGATCTTTCCCTAATTTGAAAACTTGAAAAATACTT
*
30190 TGATGGGATCTTTCCCTAA----AAAACTTTG---AAGAC-T
1 TGATGGGATCTTTCCCTAATTTGAAAAC-TTGAAAAATACTT
* * *
30224 TGATGGGATCTTTCCCTAAATTTAAAAACTTTAAAAAGAAAC-T
1 TGATGGGATCTTTCCCT-AATTTGAAAAC-TTGAAAA-ATACTT
* ** * *
30267 GGATGGGATCTTTCCCTAAATCGGAAGACTTGAACAA-AC-T
1 TGATGGGATCTTTCCCT-AATTTGAAAACTTGAAAAATACTT
* * *
30307 TGATGGGATCTTTCCCTAATTAGAAATCTTG--AAA-GC-T
1 TGATGGGATCTTTCCCTAATTTGAAAACTTGAAAAATACTT
* *
30344 TGATGGAATCTTTCCCTAATTTTGAAATCCTTGAAAAAAATACTT
1 TGATGGGATCTTTCCCTAA-TTTGAAA-ACTTG--AAAAATACTT
*
30389 TGGTGGGATCTTTCCCTAATTTTGAAAACTTGAAAAATACTT
1 TGATGGGATCTTTCCCTAA-TTTGAAAACTTGAAAAATACTT
* *
30431 TGGTGGGATCTTTCCCTAATTTTGAAATCTTTGAAATAATGAC-T
1 TGATGGGATCTTTCCCTAA-TTTGAAAAC-TTGAAA-AAT-ACTT
* ** * *
30475 AGATGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTA-TT
1 TGATGGGATCTTTCCCT-AATTTGAAAAC--TTGAAAAATACTT
* * *
30518 TGAAGGGATCTTTCCCTAAATTAAAAACCTTGAAAAATACTT
1 TGATGGGATCTTTCCCTAATTTGAAAA-CTTGAAAAATACTT
* * * * *
30560 TGGTGGGATCTTTCCCTAAGTTGAGATCTTTGAAAAAAAAACTT
1 TGATGGGATCTTTCCCTAATTTGAAAAC-TTG--AAAAATACTT
*
30604 TGATGGGATCTTTCCCTAAATTGAAAAACTTGAA
1 TGATGGGATCTTTCCCTAATTTG-AAAACTTGAA
30638 TTGGAAACTT
Statistics
Matches: 368, Mismatches: 49, Indels: 58
0.77 0.10 0.12
Matches are distributed among these distances:
33 2 0.01
34 20 0.05
35 7 0.02
36 2 0.01
37 22 0.06
38 25 0.07
39 22 0.06
40 19 0.05
41 10 0.03
42 80 0.22
43 55 0.15
44 65 0.18
45 39 0.11
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (41 bp):
TGATGGGATCTTTCCCTAATTTGAAAACTTGAAAAATACTT
Found at i:30455 original size:87 final size:86
Alignment explanation
Indices: 30227--30622 Score: 315
Period size: 86 Copynumber: 4.7 Consensus size: 86
30217 GAAGACTTGA
* * * * **
30227 TGGGATCTTTCCCTAAATTTA-AAAACTTTAAAAAGAAAC-TGGATGGGATCTTTCCCTAAATCG
1 TGGGATCTTTCCCT-AA-TTAGAAAACTTTGAAAA-ATACTTTGATGGGATCTTTCCCTAATTTT
* *
30290 GAAGA--CTTG-AACAA-AC-TTGA
63 GAA-ATCCTTGAAAAAATACTTTGG
* * *
30310 TGGGATCTTTCCCTAATTAGAAATC-TTG--AAA-GC-TTGATGGAATCTTTCCCTAATTTTGAA
1 TGGGATCTTTCCCTAATTAGAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATTTTGAA
30370 ATCCTTGAAAAAAATACTTTGG
66 ATCCTTG-AAAAAATACTTTGG
* *
30392 TGGGATCTTTCCCTAATTTTGAAAAC-TTGAAAAATACTTTGGTGGGATCTTTCCCTAATTTTGA
1 TGGGATCTTTCCCTAA-TTAGAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATTTTGA
* * * *
30456 AATCTTTGAAATAATGAC-TAGA
65 AATCCTTGAAAAAAT-ACTTTGG
* * * * * *
30478 TGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTA-TTTGAAGGGATCTTTCCCTAA-ATTA
1 TGGGATCTTTCCCT-AATTAGAAAAC-TTTGAAAAATACTTTGATGGGATCTTTCCCTAATTTTG
*
30541 AAAACCTTG-AAAAATACTTTGG
64 AAATCCTTGAAAAAATACTTTGG
* * *
30563 TGGGATCTTTCCCTAAGTT-GAGATCTTTGAAAAAAAAACTTTGATGGGATCTTTCCCTAA
1 TGGGATCTTTCCCTAA-TTAGAAAACTTTG--AAAAATACTTTGATGGGATCTTTCCCTAA
30623 ATTGAAAAAC
Statistics
Matches: 253, Mismatches: 39, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
76 1 0.00
77 23 0.09
78 5 0.02
79 2 0.01
80 4 0.02
81 7 0.03
82 25 0.10
83 28 0.11
84 7 0.03
85 30 0.12
86 59 0.23
87 54 0.21
88 8 0.03
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (86 bp):
TGGGATCTTTCCCTAATTAGAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATTTTGAA
ATCCTTGAAAAAATACTTTGG
Found at i:30550 original size:129 final size:129
Alignment explanation
Indices: 30393--30634 Score: 371
Period size: 129 Copynumber: 1.9 Consensus size: 129
30383 ATACTTTGGT
* * *
30393 GGGATCTTTCCCTAATTTTGAAAACTTGAAAAATACTTTGGTGGGATCTTTCCCTAATTTTGAAA
1 GGGATCTTTCCCTAATATTAAAAACTTGAAAAATACTTTGGTGGGATCTTTCCCTAA-GTTGAAA
* **
30458 TCTTTGAAATAATGAC-TAGATGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTATTTGAA
65 TCTTTGAAAAAAAAACTTAGATGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTATTTGAA
*
30522 GGGATCTTTCCCTAA-ATTAAAAACCTTGAAAAATACTTTGGTGGGATCTTTCCCTAAGTTGAGA
1 GGGATCTTTCCCTAATATTAAAAA-CTTGAAAAATACTTTGGTGGGATCTTTCCCTAAGTTGAAA
* *
30586 TCTTTGAAAAAAAAACTTTGATGGGATCTTTCCCTAAATTGAAAAACTT
65 TCTTTGAAAAAAAAACTTAGATGGGATCTTTCCCTAAATTAAAAAACTT
30635 GAATTGGAAA
Statistics
Matches: 102, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
128 24 0.24
129 78 0.76
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (129 bp):
GGGATCTTTCCCTAATATTAAAAACTTGAAAAATACTTTGGTGGGATCTTTCCCTAAGTTGAAAT
CTTTGAAAAAAAAACTTAGATGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTATTTGAA
Found at i:30612 original size:86 final size:85
Alignment explanation
Indices: 30155--30637 Score: 308
Period size: 86 Copynumber: 5.9 Consensus size: 85
30145 TACTGGATGA
30155 TGGGATCTTTCCCTAAATT-AAAACTTCTG--AAA-AC-TTGATGGGATCTTTCCC---TA--AA
1 TGGGATCTTTCCCTAAATTGAAAACTT-TGAAAAATACTTTGATGGGATCTTTCCCTAATATTAA
* * *
30210 AAACTTTG---AAGAC-TTGA
65 AAACCTTGAAAAATACTTTGG
* * * * *
30227 TGGGATCTTTCCCTAAATTTAAAAACTTTAAAAAGAAAC-TGGATGGGATCTTTCCCTAA-ATCG
1 TGGGATCTTTCCCTAAA-TTGAAAACTTTGAAAA-ATACTTTGATGGGATCTTTCCCTAATAT-T
* * * *
30290 GAAGA-CTTGAACAA-AC-TTGA
63 AAAAACCTTGAAAAATACTTTGG
* * * * *
30310 TGGGATCTTTCCCT-AATTAGAAATC-TTG--AAA-GC-TTGATGGAATCTTTCCCTAATTTTGA
1 TGGGATCTTTCCCTAAATT-GAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATATTAA
*
30369 AATCCTTGAAAAAAATACTTTGG
65 AAACCTTG--AAAAATACTTTGG
* * * *
30392 TGGGATCTTTCCCTAATTTTGAAAAC-TTGAAAAATACTTTGGTGGGATCTTTCCCTAATTTTGA
1 TGGGATCTTTCCCTAA-ATTGAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATATTAA
* * * *
30456 AATCTTTGAAATAATGAC-TAGA
65 AAACCTTGAAA-AAT-ACTTTGG
* * * *
30478 TGGGATCTTTCCCTAAATTAAAAAACTTTTGAGAACTA-TTTGAAGGGATCTTTCCCTAA-ATTA
1 TGGGATCTTTCCCTAAATT-GAAAAC-TTTGAAAAATACTTTGATGGGATCTTTCCCTAATATTA
30541 AAAACCTTGAAAAATACTTTGG
64 AAAACCTTGAAAAATACTTTGG
* * * *
30563 TGGGATCTTTCCCTAAGTTGAGATCTTTGAAAAAAAAACTTTGATGGGATCTTTCCCTAA-ATTG
1 TGGGATCTTTCCCTAAATTGAAAACTTTG--AAAAATACTTTGATGGGATCTTTCCCTAATATT-
30627 AAAAA-CTTGAA
63 AAAAACCTTGAA
30638 TTGGAAACTT
Statistics
Matches: 328, Mismatches: 45, Indels: 62
0.75 0.10 0.14
Matches are distributed among these distances:
72 17 0.05
73 3 0.01
74 7 0.02
75 2 0.01
76 1 0.00
77 40 0.12
78 6 0.02
79 3 0.01
80 4 0.01
81 9 0.03
82 26 0.08
83 33 0.10
84 9 0.03
85 35 0.11
86 68 0.21
87 57 0.17
88 8 0.02
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (85 bp):
TGGGATCTTTCCCTAAATTGAAAACTTTGAAAAATACTTTGATGGGATCTTTCCCTAATATTAAA
AACCTTGAAAAATACTTTGG
Found at i:31421 original size:22 final size:23
Alignment explanation
Indices: 31385--31440 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 23
31375 CCCAATTACT
31385 AAGCCCAAACCTAAGCAAAG-CTA
1 AAGCCCAAA-CTAAGCAAAGTCTA
*
31408 AGAGCCCAAA-TAAGCAAAGTTTA
1 A-AGCCCAAACTAAGCAAAGTCTA
31431 AAGCCCAAAC
1 AAGCCCAAAC
31441 AAAGGCCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 17 0.59
23 4 0.14
24 8 0.28
ACGTcount: A:0.48, C:0.27, G:0.14, T:0.11
Consensus pattern (23 bp):
AAGCCCAAACTAAGCAAAGTCTA
Found at i:33656 original size:23 final size:24
Alignment explanation
Indices: 33629--33675 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
33619 AGCCGCACGA
33629 AATGAAGAA-GTGACAAGCCGAGC
1 AATGAAGAAGGTGACAAGCCGAGC
33652 AATGAAGAAGTGTGACAAGCCGAG
1 AATGAAGAAG-GTGACAAGCCGAG
33676 GCGACATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
25 13 0.59
ACGTcount: A:0.43, C:0.15, G:0.32, T:0.11
Consensus pattern (24 bp):
AATGAAGAAGGTGACAAGCCGAGC
Found at i:34321 original size:22 final size:21
Alignment explanation
Indices: 34293--34349 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
34283 TGTTATGTTA
34293 TACTAAATGCAAAAAGTGAATT
1 TACTAAATGCAAAAAGTGAA-T
* *
34315 TACTAAATACCAAAAGTGAAT
1 TACTAAATGCAAAAAGTGAAT
*
34336 GACATAAATGCAAA
1 TAC-TAAATGCAAA
34350 TGTAGAAGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (21 bp):
TACTAAATGCAAAAAGTGAAT
Found at i:34565 original size:33 final size:33
Alignment explanation
Indices: 34523--34602 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
34513 GGGATTTTCT
34523 TCCTCCTGAAGAAGATCCGGACCAGATTGTTAA
1 TCCTCCTGAAGAAGATCCGGACCAGATTGTTAA
* ** *
34556 TCCTCCTGAAGAAGGTGTGGACCAGATTGTTGA
1 TCCTCCTGAAGAAGATCCGGACCAGATTGTTAA
34589 TCCTACC-GAAGAAG
1 TCCT-CCTGAAGAAG
34603 TCATGGACCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 40 0.95
34 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (33 bp):
TCCTCCTGAAGAAGATCCGGACCAGATTGTTAA
Found at i:34610 original size:33 final size:33
Alignment explanation
Indices: 34523--34612 Score: 103
Period size: 33 Copynumber: 2.7 Consensus size: 33
34513 GGGATTTTCT
* **
34523 TCCTCCTGAAGAAGATCCGGACCAGATTGTTAA
1 TCCTCCTGAAGAAGGTATGGACCAGATTGTTAA
* *
34556 TCCTCCTGAAGAAGGTGTGGACCAGATTGTTGA
1 TCCTCCTGAAGAAGGTATGGACCAGATTGTTAA
34589 TCCTACC-GAAGAA-GTCATGGACCA
1 TCCT-CCTGAAGAAGGT-ATGGACCA
34613 CACAAATGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
32 2 0.04
33 46 0.92
34 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (33 bp):
TCCTCCTGAAGAAGGTATGGACCAGATTGTTAA
Found at i:36843 original size:30 final size:29
Alignment explanation
Indices: 36805--36864 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
36795 GGTCTAGAGT
* *
36805 GAGCTGTGTGTGTGAAG-GAGAGGATTCGG
1 GAGCTGTGTGAGTG-AGTGAGAGAATTCGG
36834 GAGCATGTGTGAGTGAGTGAGAGAATTCGG
1 GAGC-TGTGTGAGTGAGTGAGAGAATTCGG
36864 G
1 G
36865 CCGGAGAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (29 bp):
GAGCTGTGTGAGTGAGTGAGAGAATTCGG
Found at i:38699 original size:30 final size:30
Alignment explanation
Indices: 38664--38745 Score: 112
Period size: 29 Copynumber: 2.8 Consensus size: 30
38654 AAGGGGGCTT
* * * *
38664 AAAATGACCACAATGCCCCTTGAGTGTGCA
1 AAAATGACCAAAATGCCCCTAGAATATGCA
*
38694 AAAATGACCAAAATACCCC-AGAATATGCA
1 AAAATGACCAAAATGCCCCTAGAATATGCA
38723 AAAATGACCAAAATGCCCCTAGA
1 AAAATGACCAAAATGCCCCTAGA
38746 TGACCCTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 25 0.56
30 20 0.44
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.16
Consensus pattern (30 bp):
AAAATGACCAAAATGCCCCTAGAATATGCA
Found at i:39222 original size:30 final size:30
Alignment explanation
Indices: 39195--40143 Score: 917
Period size: 30 Copynumber: 31.1 Consensus size: 30
39185 AACTAAAGTG
*
39195 ATGATCCT-AAACCAGGATTAAAATAAAGCG
1 ATGATCCTCAAA-CAGGATTAAAATAAAGCA
39225 ATGATCCT-AAATCAGGATTAAAATAAAGCA
1 ATGATCCTCAAA-CAGGATTAAAATAAAGCA
*
39255 ATGATCCTCAAACAGGATTAAAACAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
*
39285 AAGATCCTCAAACAGGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39315 AAGATCCTCAAACAGGATTAAAACAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39345 AAGATCCTCAAACAGGATTAAAACAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39375 AAGATCCTCAAACAGGATTAAAATAAAGCG
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
39405 ATGATCCTCAAACAGGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* **
39435 AAGATCCTCAAACAGGACCAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39465 CAT-ATCCTCAACCAGGATTAAGATTGACAAAGCA
1 -ATGATCCTCAAACAGGATTAA-A---ATAAAGCA
* * * *
39499 ATAAT-GTTAAATCATGACTGAAATATAACTGATAAAGCA
1 ATGATCCTCAAA-CA-G---G--AT-TAA--AATAAAGCA
* * * **
39538 ATGAT-C-AAAATTCA--AATAAACTAAAGTG
1 ATGATCCTCAAA--CAGGATTAAAATAAAGCA
*
39566 ATAATCCT-AAATCAGGATTGAAATTAACTCATAATGCA
1 ATGATCCTCAAA-CAGGATT--AA--AA-T-A-AA-GCA
* * * *
39604 ATAATCCT-ACATCGGGATTAACTGATAAAGCA
1 ATGATCCTCA-AACAGGATTAA--AATAAAGCA
39636 ATGATCCT-AAACCAGGATTAAAATAAAGCA
1 ATGATCCTCAAA-CAGGATTAAAATAAAGCA
*
39666 ATGATCCT-AAACCAGGATTATAATAAAGCA
1 ATGATCCTCAAA-CAGGATTAAAATAAAGCA
* * *
39696 ACGATCCTCAACCAAGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
39726 ATGATCCTCAAACAGGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
*
39756 AAGATCCTCAAACAGGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39786 ACGATCCTCAAATAGGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* * * *
39816 AAGTTCCTCAAATAGGACTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
39846 ACGATCCTCAAACATGATTAAAATAAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* **
39876 AAGATCCTCAAACAGGACCAAAATAAAGCAA
1 ATGATCCTCAAACAGGATTAAAATAAAGC-A
* *
39907 AT-ATCCTCAACCAGGATTAAAATAAAGTA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* * *
39936 ACGATCCTCAACCAGGATTAAAAATAAAGTA
1 ATGATCCTCAAACAGGATT-AAAATAAAGCA
* *
39967 ATGATCCTCAACCAGGATTAAAATGAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
*
39997 ATGATCCTCAAACAGGATTAAAATGAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* * *
40027 ATAATCCTCAAACAGGATTAGAATAAAGTA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
40057 ATGATCCTCAAACAAGATTAAAATAAAACA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
*
40087 ATGATCCTCAAATAGGATTAAAAT-AA-C-
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
* *
40114 --GATCCTCAACCAGGATTAAAATGAAGCA
1 ATGATCCTCAAACAGGATTAAAATAAAGCA
40142 AT
1 AT
40144 CACGCAATGA
Statistics
Matches: 788, Mismatches: 91, Indels: 80
0.82 0.09 0.08
Matches are distributed among these distances:
25 20 0.03
26 2 0.00
27 1 0.00
28 13 0.02
29 8 0.01
30 613 0.78
31 40 0.05
32 21 0.03
33 7 0.01
34 13 0.02
35 3 0.00
36 5 0.01
37 2 0.00
38 20 0.03
39 15 0.02
40 2 0.00
41 3 0.00
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.20
Consensus pattern (30 bp):
ATGATCCTCAAACAGGATTAAAATAAAGCA
Found at i:40676 original size:69 final size:69
Alignment explanation
Indices: 40531--40985 Score: 829
Period size: 69 Copynumber: 6.6 Consensus size: 69
40521 AAGTAAGGCT
* * * *
40531 TGACTCGTATGGAAACGAGTTCGGCTTGTGGAAAAAACCTATATGGCTTGGATGGAACCAATGCT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGG-AAAAGCCTATGTGGCTTGGATGGAACCAAGGCT
*
40596 TAAAT
65 TAAAC
*
40601 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGTTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
40666 AAAC
66 AAAC
40670 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
40735 AAAC
66 AAAC
*
40739 TGACTCGTATGGAAACGAGTTTGGCTTGTAGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
40804 AAAC
66 AAAC
*
40808 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGACTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
40873 AAAC
66 AAAC
40877 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
40942 AAAC
66 AAAC
40946 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTA
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTA
40986 ATCATTCGGA
Statistics
Matches: 374, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
69 344 0.92
70 30 0.08
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (69 bp):
TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCTTGGATGGAACCAAGGCTT
AAAC
Found at i:42660 original size:10 final size:9
Alignment explanation
Indices: 42646--42671 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
42636 TTTTTTTCAA
42646 ATTTTTTGG
1 ATTTTTTGG
42655 ATTTTTTGG
1 ATTTTTTGG
42664 ATTTTTTG
1 ATTTTTTG
42672 TTTTTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69
Consensus pattern (9 bp):
ATTTTTTGG
Found at i:43075 original size:9 final size:9
Alignment explanation
Indices: 43063--43094 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
43053 CTTTACTTCC
43063 TTTTTCA-T
1 TTTTTCATT
43071 TTTTTCATT
1 TTTTTCATT
43080 TTTTTCATT
1 TTTTTCATT
43089 TTTTTC
1 TTTTTC
43095 CATTACTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTCATT
Found at i:43081 original size:7 final size:8
Alignment explanation
Indices: 43063--43092 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
43053 CTTTACTTCC
43063 TTTTTCAT
1 TTTTTCAT
43071 TTTTTCATT
1 TTTTTCA-T
43080 TTTTTCAT
1 TTTTTCAT
43088 TTTTT
1 TTTTT
43093 TCCATTACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTCAT
Done.