Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024070.1 Corchorus olitorius cultivar O-4 contig24103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28285

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1046--1125
29
2.7
29
88
1
115
41
26
15
17
1.88
4563--4598
18
1.9
18
88
5
54
38
2
22
36
1.69
5338--5362
12
2.1
12
100
0
50
24
24
24
28
2.00
7964--7992
15
2.0
15
93
6
51
6
10
13
68
1.37
9733--9768
18
1.9
18
88
5
54
38
2
22
36
1.69
10367--10392
11
2.4
11
100
0
52
7
15
7
69
1.35
15869--15904
19
1.9
18
88
5
54
27
22
8
41
1.82
17494--17534
22
1.9
21
85
5
55
65
9
2
21
1.34
17494--17544
22
2.3
21
80
12
50
64
9
3
21
1.40
19051--19077
9
3.0
9
100
0
54
33
22
22
22
1.97
19122--19169
24
2.1
22
85
11
62
29
29
10
31
1.90
22463--22498
19
1.9
18
88
5
54
27
22
8
41
1.82
23658--23692
17
2.1
17
88
0
52
37
5
8
48
1.58
24671--24742
21
3.4
21
86
0
99
8
19
51
20
1.72
25496--25523
12
2.3
12
100
0
56
35
7
25
32
1.83

Tables:   1

The End!