Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024074.1 Corchorus olitorius cultivar O-4 contig24107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88415

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--86
31
2.8
31
94
1
145
25
15
14
44
1.84
199--272
29
2.5
30
91
4
114
44
13
18
22
1.85
1521--1560
15
2.6
15
88
4
53
15
10
12
62
1.54
1521--1578
16
3.7
15
79
11
55
13
13
12
60
1.60
7888--7919
13
2.5
13
89
0
55
6
6
12
75
1.19
10498--10523
10
2.6
10
100
0
52
57
0
7
34
1.27
14572--14625
11
5.2
11
80
15
53
38
18
1
40
1.61
17845--17876
15
2.1
15
94
0
55
68
0
3
28
1.04
18131--18187
30
1.9
30
100
0
114
19
29
15
35
1.93
18593--18642
25
2.0
25
92
0
82
30
18
18
34
1.94
22909--22953
16
2.9
15
83
9
54
82
2
4
11
0.91
22967--23045
34
2.3
32
77
14
79
51
12
6
29
1.64
28576--28611
18
1.9
18
88
5
54
38
2
22
36
1.69
29199--29224
11
2.4
11
100
0
52
7
15
7
69
1.35
31207--31292
41
2.0
43
82
8
106
26
11
6
54
1.61
34530--34565
18
1.9
18
88
5
54
38
2
22
36
1.69
35153--35178
11
2.4
11
100
0
52
7
15
7
69
1.35
41542--41637
23
3.7
27
75
12
92
13
13
28
44
1.81
41540--41636
50
1.9
51
89
2
151
15
13
26
44
1.83
43218--43338
60
2.0
60
95
0
215
30
33
5
30
1.81
43226--43360
60
2.2
59
84
5
180
30
30
5
33
1.81
44030--44132
41
2.5
40
75
6
98
22
13
13
50
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44779--44823
8
5.9
8
85
15
51
75
0
15
8
1.03
44781--44836
15
3.6
16
76
9
53
73
1
14
10
1.18
46326--46363
20
1.9
20
100
0
76
57
10
7
23
1.58
47502--47599
45
2.2
45
88
0
142
17
28
19
34
1.94
49218--49305
45
2.0
43
89
6
133
42
22
4
30
1.74
50730--50754
2
12.5
2
100
0
50
48
0
0
52
1.00
61249--61287
2
19.5
2
100
0
78
48
0
0
51
1.00
66446--66641
68
2.9
67
81
1
230
34
17
12
36
1.87
68881--69201
108
3.0
108
97
0
597
28
15
19
36
1.93
75639--75792
76
2.0
77
94
3
274
24
16
11
47
1.80
80530--80616
31
2.8
33
81
10
110
37
20
20
20
1.94
84639--84699
16
3.8
16
76
20
63
60
1
1
36
1.16
85060--85098
20
2.0
19
90
5
60
71
7
7
12
1.29
87529--87571
21
2.0
22
86
4
61
41
44
9
4
1.57
87594--87634
16
2.6
16
88
0
64
39
43
12
4
1.63
88305--88346
2
20.0
2
90
9
66
47
2
2
47
1.28
88346--88415
2
35.0
2
100
0
140
50
0
50
0
1.00

Tables:   1

The End!