Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024075.1 Corchorus olitorius cultivar O-4 contig24108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47581
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Found at i:841 original size:20 final size:19
Alignment explanation
Indices: 816--864 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
806 TCAATAAATT
816 TATAATAATATATTTAATAA
1 TATAATAATATATTTAA-AA
* *
836 TATAAT-ATGTTATTTAAAT
1 TATAATAAT-ATATTTAAAA
855 TATAATAATA
1 TATAATAATA
865 CCTTATTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TATAATAATATATTTAAAA
Found at i:9193 original size:52 final size:52
Alignment explanation
Indices: 9115--9219 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
9105 TTTCCAGAGG
*
9115 TCAATTTTGCCGAAAAGATTTAAAAATCCCATGCTTCCCAATTCCCATAGCT
1 TCAATTTTGCCGAAAAAATTTAAAAATCCCATGCTTCCCAATTCCCATAGCT
* * *
9167 TCAATTTTGCTGAAAAAATTTTAAAATCTCATGCTTCCCAATTCCCATAGCT
1 TCAATTTTGCCGAAAAAATTTAAAAATCCCATGCTTCCCAATTCCCATAGCT
9219 T
1 T
9220 TATCACTGCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (52 bp):
TCAATTTTGCCGAAAAAATTTAAAAATCCCATGCTTCCCAATTCCCATAGCT
Found at i:9797 original size:16 final size:16
Alignment explanation
Indices: 9776--9808 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
9766 TAATATATCC
9776 TTAAAAAATAAATTCT
1 TTAAAAAATAAATTCT
*
9792 TTAAAAAATACATTCT
1 TTAAAAAATAAATTCT
9808 T
1 T
9809 AAATATCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (16 bp):
TTAAAAAATAAATTCT
Found at i:9810 original size:15 final size:15
Alignment explanation
Indices: 9775--9811 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
9765 ATAATATATC
9775 CTTAAAAAATAAATT
1 CTTAAAAAATAAATT
*
9790 CTTTAAAAAATACATT
1 C-TTAAAAAATAAATT
9806 CTTAAA
1 CTTAAA
9812 TATCCTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (15 bp):
CTTAAAAAATAAATT
Found at i:10032 original size:19 final size:19
Alignment explanation
Indices: 10014--10050 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10004 TATTAATTAT
10014 TTTA-ATATTATATTTTTA
1 TTTATATATTATATTTTTA
10032 TTTATATATTATATTTTTA
1 TTTATATATTATATTTTTA
10051 CTTAAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATATATTATATTTTTA
Found at i:11522 original size:16 final size:16
Alignment explanation
Indices: 11489--11594 Score: 92
Period size: 16 Copynumber: 6.7 Consensus size: 16
11479 TGGGTTCGGG
11489 CGGGTTCGGGTA-TTT
1 CGGGTTCGGGTATTTT
* *
11504 CGGGTTTGGGTTTTTT
1 CGGGTTCGGGTATTTT
11520 CGGGTTCGGGTATTTT
1 CGGGTTCGGGTATTTT
* * **
11536 CGGGCTCGTGT-TAAGT
1 CGGGTTCGGGTAT-TTT
*
11552 CGGGTTCGGATATTTT
1 CGGGTTCGGGTATTTT
* *
11568 CGGGCTCGGGT-TATGT
1 CGGGTTCGGGTAT-TTT
11584 CGGGTTCGGGT
1 CGGGTTCGGGT
11595 GCGGACTCGA
Statistics
Matches: 70, Mismatches: 17, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
15 12 0.17
16 57 0.81
17 1 0.01
ACGTcount: A:0.07, C:0.14, G:0.40, T:0.40
Consensus pattern (16 bp):
CGGGTTCGGGTATTTT
Found at i:11555 original size:32 final size:32
Alignment explanation
Indices: 11489--11594 Score: 133
Period size: 32 Copynumber: 3.3 Consensus size: 32
11479 TGGGTTCGGG
* * ***
11489 CGGGTTCGGGTA-TTTCGGGTTTGGGTTTTTT
1 CGGGTTCGGGTATTTTCGGGCTCGGGTTAAGT
*
11520 CGGGTTCGGGTATTTTCGGGCTCGTGTTAAGT
1 CGGGTTCGGGTATTTTCGGGCTCGGGTTAAGT
* *
11552 CGGGTTCGGATATTTTCGGGCTCGGGTTATGT
1 CGGGTTCGGGTATTTTCGGGCTCGGGTTAAGT
11584 CGGGTTCGGGT
1 CGGGTTCGGGT
11595 GCGGACTCGA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
31 12 0.19
32 52 0.81
ACGTcount: A:0.07, C:0.14, G:0.40, T:0.40
Consensus pattern (32 bp):
CGGGTTCGGGTATTTTCGGGCTCGGGTTAAGT
Found at i:11755 original size:13 final size:12
Alignment explanation
Indices: 11732--11778 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
11722 AAGTTTATTG
11732 ATAATATATAAT
1 ATAATATATAAT
11744 ATAATAATATAAT
1 ATAAT-ATATAAT
* *
11757 ATAACAT-TATT
1 ATAATATATAAT
11768 ATCAATATATA
1 AT-AATATATA
11779 TAAAGATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 5 0.17
12 11 0.38
13 13 0.45
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATATATAAT
Found at i:12348 original size:2 final size:2
Alignment explanation
Indices: 12343--12379 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
12333 ATATAACTTT
*
12343 TA TA TA TA TA TA TA TA TA TA TA TC TA -A T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12380 TTAGTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12590 original size:23 final size:23
Alignment explanation
Indices: 12564--12608 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
12554 TATTTCGGAT
12564 TCGGGCTCGAGTCGGGATCGGGC
1 TCGGGCTCGAGTCGGGATCGGGC
* * *
12587 TCGGTCTCGGGTCGGGTTCGGG
1 TCGGGCTCGAGTCGGGATCGGG
12609 TAATTTCGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.04, C:0.24, G:0.49, T:0.22
Consensus pattern (23 bp):
TCGGGCTCGAGTCGGGATCGGGC
Found at i:14372 original size:20 final size:22
Alignment explanation
Indices: 14326--14372 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
14316 ACAAAGGCTG
* *
14326 ATAAAATTTTAATTTTTTTGAT
1 ATAAAATTCTAATTTTCTTGAT
14348 A-AAAATTCT-ATTTTCTT-AT
1 ATAAAATTCTAATTTTCTTGAT
14367 ATAAAA
1 ATAAAA
14373 AAAGCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 7 0.32
22 1 0.05
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
ATAAAATTCTAATTTTCTTGAT
Found at i:15125 original size:32 final size:32
Alignment explanation
Indices: 15084--15188 Score: 140
Period size: 32 Copynumber: 3.3 Consensus size: 32
15074 TTTTTCTTGT
*
15084 TTACGAAATTGAATTCAAGATTAACAACATTA
1 TTACCAAATTGAATTCAAGATTAACAACATTA
* * * *
15116 TTACGAAATTGAA-TCAATATTGACAACATTG
1 TTACCAAATTGAATTCAAGATTAACAACATTA
* *
15147 TTACCAAATTTAATTCAAGATTAGCAACATTA
1 TTACCAAATTGAATTCAAGATTAACAACATTA
15179 TTACCAAATT
1 TTACCAAATT
15189 TATTAGCAGT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
31 26 0.41
32 37 0.59
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (32 bp):
TTACCAAATTGAATTCAAGATTAACAACATTA
Found at i:18495 original size:26 final size:27
Alignment explanation
Indices: 18461--18521 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
18451 AAATTACCAA
*
18461 GGGCATTTTGGTCATTTT-TGCCTCAG
1 GGGCATTTTGGTCATTTTCCGCCTCAG
18487 GGGCATTTTGGTCATTTTCCGCCTCAG
1 GGGCATTTTGGTCATTTTCCGCCTCAG
18514 GGGCATTT
1 GGGCATTT
18522 AGGCATGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.11, C:0.21, G:0.28, T:0.39
Consensus pattern (27 bp):
GGGCATTTTGGTCATTTTCCGCCTCAG
Found at i:21293 original size:47 final size:47
Alignment explanation
Indices: 21132--21887 Score: 1066
Period size: 47 Copynumber: 16.2 Consensus size: 47
21122 ATGAACAGTG
*
21132 AAAGAAGAAGAAATTAAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
1 AAAGAAGAAGAGATT-AGTTTAATTCTAGGTAATTAAACTAAGTAGTA
21180 AAAGAAGAAGAGATTAGTTTAATTCTA-G---TTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
21223 AAAG-AGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
21269 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* *
21316 AAAGAAGAAGAGATCAGTTTAATTCTAGGTAATTAAACTAAATAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * * *
21363 AAAGAGGAGGAGATTAGTTTAATTCTAGATACTTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* *
21410 AAAG-AGAAGGAGATTAGTTTAATTTTAGGTAATTAAACTAAATAGTA
1 AAAGAAGAA-GAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * * *
21457 AAAGAGGAGGAGATTAGTTTAATTCTAGATAATTAAACTAAGTAATA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
21504 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* *
21551 AAAGAAGAAGATATTAGTTTAATTCTAGGTAATTAAACTAAATAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * *
21598 AAA-AAGGAGGAGATTAGTTTAATTCTAGATAATTTAACTAAGTAGTA
1 AAAGAA-GAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
*
21645 AAAGAAGAAGAGATTAATTTAATTCTAGGTAATTAAACTAAGTAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* *
21692 AAAGAAGAAGGGATTAGTTTAATTCTAGGTAATTAAACTAAATAGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * * * *
21739 AAAGAGGAGGAGATTAGTTTAATTATAGATAATTAAACTAAGTCGTA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * * * *
21786 AAAGAAGAAAAGTTTAGTTTAATTCTAGGTAACTAAACTAAGTGGCA
1 AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
* * *
21833 AAAGGAA-AAGAGATATTGGTTTAAGTCTA-G-AATTAAACTAAATAG-A
1 AAA-GAAGAAGAG--ATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
21879 AAATGAAGA
1 AAA-GAAGA
21888 TCAAGCAATT
Statistics
Matches: 632, Mismatches: 63, Indels: 27
0.88 0.09 0.04
Matches are distributed among these distances:
42 22 0.03
43 20 0.03
46 31 0.05
47 525 0.83
48 22 0.03
49 12 0.02
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.29
Consensus pattern (47 bp):
AAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGTAGTA
Found at i:25432 original size:21 final size:21
Alignment explanation
Indices: 25408--25478 Score: 117
Period size: 21 Copynumber: 3.4 Consensus size: 21
25398 CTTAGGCAAT
*
25408 TCCAATGAGCTTGAAACCTTC
1 TCCAATGAGCTTGGAACCTTC
25429 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
25450 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
25471 TCCAATGA
1 TCCAATGA
25479 TCTCCTAGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 3 0.06
21 45 0.94
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (21 bp):
TCCAATGAGCTTGGAACCTTC
Found at i:30904 original size:25 final size:24
Alignment explanation
Indices: 30867--30913 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
30857 CTAGAAAATT
30867 TGAAAAACTTTGATGGATGAGATGGA
1 TGAAAAACTTTGAT-GAT-AGATGGA
30893 TGAAAAAC-TTGATGATAGATG
1 TGAAAAACTTTGATGATAGATG
30914 AATAGAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 5 0.24
26 8 0.38
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (24 bp):
TGAAAAACTTTGATGATAGATGGA
Found at i:31807 original size:21 final size:21
Alignment explanation
Indices: 31783--31874 Score: 159
Period size: 21 Copynumber: 4.4 Consensus size: 21
31773 CTTAGGCAAT
*
31783 TCCAATGAGCTTGAAACCTTC
1 TCCAATGAGCTTGGAACCTTC
31804 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
31825 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
31846 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
31867 TCCAATGA
1 TCCAATGA
31875 TCTCCTAGCA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
20 3 0.04
21 66 0.96
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (21 bp):
TCCAATGAGCTTGGAACCTTC
Found at i:32902 original size:35 final size:35
Alignment explanation
Indices: 32858--32931 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
32848 TGAGGAAACG
* *
32858 ATGGTTTGTAATCCTTAAATTTTATTCTCAGAACA
1 ATGGCTTGTAATCCTTAAATTTTATCCTCAGAACA
*
32893 ATGGCTTGTAATCCTTAATTTTTATCCTCAGAACA
1 ATGGCTTGTAATCCTTAAATTTTATCCTCAGAACA
32928 ATGG
1 ATGG
32932 TTTTATGATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (35 bp):
ATGGCTTGTAATCCTTAAATTTTATCCTCAGAACA
Found at i:41827 original size:26 final size:27
Alignment explanation
Indices: 41793--41859 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
41783 AAATTAACAA
*
41793 GGGCATTTTGGTCATTTT-TGCCTCAG
1 GGGCATTTTGGTCATTTTCCGCCTCAG
41819 GGGCATTTTGGTCATTTTCCGCCTCAG
1 GGGCATTTTGGTCATTTTCCGCCTCAG
*
41846 GGGCATTTAGGTCA
1 GGGCATTTTGGTCA
41860 AGAATACTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 18 0.47
27 20 0.53
ACGTcount: A:0.13, C:0.21, G:0.28, T:0.37
Consensus pattern (27 bp):
GGGCATTTTGGTCATTTTCCGCCTCAG
Found at i:44958 original size:47 final size:47
Alignment explanation
Indices: 44872--45494 Score: 950
Period size: 47 Copynumber: 13.3 Consensus size: 47
44862 TAAAATGAAC
*
44872 AGTAAAAGAAGAAGAAATTAAGTTTAATTCTAGGTAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATT-AGTTTAATTCTAGGTAATTAAACTAAGT
*
44920 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAAT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
44967 AGTAAAAG-AGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
*
45013 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTCATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
*
45060 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAAT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* *
45107 AGTAAAAGAGGAGGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
*
45154 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAAT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* * *
45201 AGTAAAAGAGGAGGAGATTAGTTTAATTCTAGATAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
*
45248 GGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* * *
45295 AGTAAAAGAAGGAGAGATTACTTTAATTCTAGGTAATTAAACTAAAT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* * *
45342 AGTAAAAGAGGAAAAGATTAGTTTAATTCTAGATAATTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* *
45389 CGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAACTAAACTAAGT
1 AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
* * * * *
45436 GGCAAAAGGAA-AAGAGATATTGGTTTAAGTCTA-G-AATTAAACTAAAT
1 AGTAAAA-GAAGAAGAG--ATTAGTTTAATTCTAGGTAATTAAACTAAGT
45483 AG-AAAATGAAGA
1 AGTAAAA-GAAGA
45495 TCAAGCAATT
Statistics
Matches: 527, Mismatches: 43, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
46 52 0.10
47 440 0.83
48 22 0.04
49 13 0.02
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.29
Consensus pattern (47 bp):
AGTAAAAGAAGAAGAGATTAGTTTAATTCTAGGTAATTAAACTAAGT
Done.