Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024078.1 Corchorus olitorius cultivar O-4 contig24111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32746

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8317--8358
22
1.9
22
95
0
75
9
54
23
11
1.66
9270--9320
24
2.1
25
88
3
77
17
5
3
72
1.20
12974--13015
22
1.9
22
95
0
75
9
54
23
11
1.66
13925--13972
24
2.0
25
87
4
71
16
6
4
72
1.20
15855--15885
3
10.3
3
100
0
62
32
0
0
67
0.91
16693--16727
16
2.2
16
100
0
70
28
25
25
20
1.99
16766--16806
4
10.0
4
84
5
55
31
0
0
68
0.90
17252--17482
116
2.0
114
94
1
408
41
11
6
41
1.65
17785--17851
29
2.2
31
81
5
84
32
22
7
37
1.82
21523--21870
133
2.6
133
88
5
497
39
12
8
39
1.74
21523--21916
133
2.9
133
83
7
361
40
12
8
37
1.75
29094--29129
18
1.9
18
88
5
54
36
22
2
38
1.69
29544--29583
2
19.5
2
94
5
71
50
2
0
47
1.14
29768--29882
57
2.0
56
93
1
194
33
25
0
40
1.62
29948--30028
42
1.9
42
97
0
153
29
7
16
46
1.73
32459--32509
21
2.4
21
83
6
68
13
23
47
15
1.82

Tables:   1

The End!