Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024079.1 Corchorus olitorius cultivar O-4 contig24112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38872

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4471--4506
18
1.9
18
88
5
54
36
22
2
38
1.69
13441--13466
2
13.0
2
100
0
52
50
50
0
0
1.00
13468--13501
2
17.0
2
100
0
68
50
0
0
50
1.00
13554--13797
43
5.8
42
84
8
300
22
9
27
40
1.85
13553--13797
84
2.9
83
90
4
386
22
9
27
40
1.86
16076--16109
14
2.4
14
90
0
50
29
20
8
41
1.82
25211--25255
21
2.1
21
87
0
63
31
33
22
13
1.92
26824--26848
4
6.2
4
100
0
50
76
0
24
0
0.80
28597--28722
61
2.1
61
100
0
252
26
16
22
34
1.95
31228--31565
178
1.9
178
89
2
527
34
13
16
35
1.88
32924--32955
4
8.0
4
100
0
64
50
0
0
50
1.00
33601--33652
8
7.0
8
75
16
58
30
26
13
28
1.94
33595--33652
15
3.9
15
97
2
109
31
27
13
27
1.94
34643--34672
3
10.0
3
100
0
60
0
33
33
33
1.58
37881--37925
20
2.2
20
92
0
72
40
24
13
22
1.90

Tables:   1

The End!