Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024081.1 Corchorus olitorius cultivar O-4 contig24114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37371

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54--133
41
2.0
41
92
0
133
40
15
20
25
1.90
89--403
132
2.4
133
93
0
533
35
17
17
29
1.93
354--444
41
2.2
41
92
0
146
37
18
19
24
1.94
217--587
173
2.1
173
92
1
618
36
17
17
28
1.93
1643--1829
95
2.0
95
92
0
311
17
19
32
29
1.95
1872--2037
37
4.5
37
81
4
208
25
19
38
16
1.92
1959--2024
20
3.5
20
71
12
66
25
19
36
18
1.94
8067--8134
33
2.1
33
100
0
136
25
26
17
30
1.97
9617--9641
11
2.3
11
100
0
50
76
0
8
16
1.02
11063--11174
50
2.2
50
100
0
224
50
16
14
18
1.79
13211--13266
28
2.0
28
100
0
112
28
7
7
57
1.52
13365--13426
10
6.4
10
74
22
53
45
0
0
54
0.99
14383--14802
104
4.0
104
96
0
768
35
13
15
35
1.87
21557--21589
1
33.0
1
100
0
66
100
0
0
0
0.00
21961--22141
90
2.0
90
98
0
353
24
13
30
30
1.93
23538--23591
16
3.4
16
79
5
74
35
27
22
14
1.93
23520--23591
31
2.3
31
88
7
101
36
29
19
15
1.92
31215--31264
25
2.0
25
100
0
100
48
4
24
24
1.68
31258--31296
19
2.1
19
100
0
78
30
5
25
38
1.78
33602--33641
15
2.6
16
88
8
64
65
12
7
15
1.47
34392--34417
11
2.4
11
100
0
52
69
7
15
7
1.35

Tables:   1

The End!