Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024082.1 Corchorus olitorius cultivar O-4 contig24115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6402
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:683 original size:21 final size:21

Alignment explanation


    Indices: 659--700  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        649 GATGACTTAT

                                  
        659 ATGCTAT-AATTGCTATGATTG
          1 ATGCTATGAATTGCT-TGATTG

                 *               
        680 ATGCTTTGAATTGCTTGATTG
          1 ATGCTATGAATTGCTTGATTG

        701 GGTGCACACT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45


Consensus pattern (21 bp):   
ATGCTATGAATTGCTTGATTG
Done.