Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024086.1 Corchorus olitorius cultivar O-4 contig24119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37580

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1072--1178
51
2.1
52
91
1
171
48
16
17
16
1.81
3633--3675
22
2.0
22
81
9
52
60
6
11
20
1.54
3851--3891
21
2.0
21
85
0
55
19
7
31
41
1.79
5311--5367
26
2.2
26
90
0
87
29
12
21
36
1.90
9581--9754
26
6.6
25
76
12
145
54
1
19
25
1.52
9717--9789
36
2.1
34
84
5
92
53
1
21
23
1.54
9713--9876
62
2.7
62
80
4
190
54
0
20
25
1.49
9810--10124
26
12.0
26
73
15
120
56
0
18
24
1.47
9553--10118
207
2.8
204
83
8
732
56
1
18
24
1.48
9812--9956
26
5.5
26
79
10
129
55
1
18
24
1.50
9918--10059
34
4.1
34
74
6
108
60
0
18
20
1.41
9940--10000
20
2.9
21
75
7
61
73
0
11
14
1.09
9948--9996
16
3.0
16
77
14
55
75
0
10
14
1.04
10017--10124
26
4.0
27
89
6
150
53
0
19
25
1.51
9581--10117
52
10.0
55
70
17
253
55
1
18
24
1.50
10126--10175
25
2.2
22
80
16
57
48
0
22
30
1.51
10086--10166
43
1.9
42
90
5
128
45
0
22
32
1.52
10200--10261
14
4.3
14
72
8
61
46
3
19
30
1.65
10214--10308
30
3.0
31
84
6
102
50
2
16
30
1.57
10224--10323
34
3.1
33
81
11
109
48
1
18
33
1.55
10555--10601
20
2.3
21
88
3
69
55
4
12
27
1.56
13801--13836
19
1.9
18
88
5
54
33
22
2
41
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14372--14430
29
2.0
29
100
0
118
49
10
6
33
1.63
19454--19500
15
3.0
16
68
6
51
36
14
14
34
1.88
21056--21088
16
2.1
16
88
5
50
57
18
3
21
1.53
23299--23831
40
12.8
40
82
8
324
37
20
27
14
1.92
23302--23736
40
10.7
40
85
4
514
36
20
28
14
1.92
23707--23841
47
2.9
47
92
2
218
38
20
25
15
1.92
24345--24768
51
8.2
49
76
10
246
35
16
5
43
1.70
24345--24684
101
3.3
100
75
8
222
34
16
5
43
1.71
24426--24768
51
6.8
52
78
9
286
35
15
4
43
1.69
30604--30695
21
4.4
21
95
2
143
26
26
19
28
1.99
35440--35472
16
2.1
16
88
5
50
57
18
3
21
1.53

Tables:   1

The End!