Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024088.1 Corchorus olitorius cultivar O-4 contig24121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3200
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32


Found at i:147 original size:26 final size:27

Alignment explanation


    Indices: 99--149  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

         89 CGAAAGAAGA

                     **                
         99 TTTTAGAAATTAATAAAATTGGTAAGT
          1 TTTTAGAAAAAAATAAAATTGGTAAGT

                          *          
        126 TTTTAGAAAAAAATCAAA-TGGTAA
          1 TTTTAGAAAAAAATAAAATTGGTAA

        150 AAGGTTTTGT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26    6  0.29
  27   15  0.71

ACGTcount: A:0.49, C:0.02, G:0.14, T:0.35


Consensus pattern (27 bp):   
TTTTAGAAAAAAATAAAATTGGTAAGT
Done.