genome.fa.s24095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024095.1 Corchorus olitorius cultivar O-4 contig24128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57919

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2358--2428	21	3.4	21	94	3	117	28	18	26	26	1.98
9434--9510	27	2.9	27	92	0	127	44	11	6	37	1.67
12272--12307	19	1.9	18	88	5	54	77	5	2	13	1.05
14809--14862	23	2.3	24	81	15	60	72	5	9	12	1.27
15034--15064	15	2.0	16	93	6	55	58	6	6	29	1.48
17783--17912	59	2.2	58	94	1	224	26	33	25	14	1.94
18435--18486	18	2.9	18	88	0	77	36	28	25	9	1.87
19074--19125	27	1.9	27	96	0	95	40	9	7	42	1.66
19081--19132	27	2.1	25	82	13	63	44	9	5	40	1.61
22696--22758	32	1.9	33	96	3	119	28	28	15	26	1.96
28916--28955	21	1.9	21	100	0	80	62	5	0	32	1.17
29651--29690	20	2.0	20	100	0	80	60	5	0	35	1.19
30047--30093	22	2.1	22	92	0	76	61	12	4	21	1.48
32403--32439	2	20.0	2	84	15	53	48	0	0	51	1.00
32477--32838	181	2.0	180	94	0	634	16	36	11	35	1.85
38405--38476	27	2.7	27	88	0	99	38	29	16	15	1.89
38933--39487	30	18.9	30	82	7	577	45	20	13	20	1.85
38965--39491	85	6.0	85	85	6	673	44	21	13	20	1.85
39699--39928	73	3.2	72	87	4	313	44	19	17	18	1.87
39699--39969	35	7.6	36	84	4	316	43	19	18	18	1.89
39699--39968	73	3.8	70	84	4	218	43	20	18	18	1.88
41943--41973	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48177--48201	11	2.3	11	100	0	50	0	0	8	92	0.40
49905--49976	27	2.7	27	88	0	99	38	29	16	15	1.89
52848--52883	18	1.9	18	88	5	54	36	22	2	38	1.69
55229--55266	19	2.1	18	90	5	58	39	21	0	39	1.53

Tables:   1

The End!