Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024098.1 Corchorus olitorius cultivar O-4 contig24131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4645

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
320--416
22
4.5
22
80
11
87
37
7
12
43
1.70
342--416
20
3.6
21
85
5
98
37
8
12
42
1.71
320--420
43
2.4
42
85
5
123
37
7
11
42
1.71
484--594
55
2.0
55
100
0
222
47
7
10
34
1.66
967--1009
22
2.0
22
85
0
59
41
20
18
18
1.90
1839--1897
31
1.9
31
92
0
100
50
6
13
28
1.67
2711--2780
21
3.5
21
67
26
62
51
7
14
27
1.68
2701--2778
38
2.1
37
95
2
138
48
8
12
29
1.72
3268--3412
70
2.1
70
97
0
272
44
22
7
24
1.79
3798--3931
22
6.3
22
75
13
111
43
12
8
35
1.74
4124--4225
22
4.6
21
72
20
75
38
13
7
40
1.74
4125--4225
46
2.3
43
86
5
130
38
12
7
40
1.73
4236--4335
22
4.5
23
72
12
84
35
15
12
38
1.84
4236--4335
44
2.3
45
79
11
109
35
15
12
38
1.84

Tables:   1

The End!