Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024099.1 Corchorus olitorius cultivar O-4 contig24132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113875

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
207--244
20
1.9
20
88
0
58
2
10
34
52
1.50
311--419
11
10.4
11
69
7
57
43
4
0
51
1.28
315--403
42
2.1
41
87
6
126
43
4
1
50
1.29
384--432
22
2.1
22
85
7
62
46
4
2
46
1.33
498--531
18
1.9
18
94
5
61
44
35
5
14
1.70
8921--9096
37
4.9
37
90
8
301
27
12
22
38
1.90
8921--9110
68
2.7
68
90
5
299
27
13
21
37
1.91
14439--15440
218
4.6
219
89
3
1454
35
7
21
35
1.81
14439--15440
437
2.3
430
89
3
1508
35
7
21
35
1.81
15920--16592
215
3.2
215
86
5
917
36
21
7
33
1.82
17403--17533
51
2.5
51
78
6
129
25
9
23
41
1.83
19579--19625
24
2.0
24
91
0
76
25
4
19
51
1.65
19577--19710
40
3.4
40
84
1
171
29
6
18
45
1.75
20484--21212
217
3.4
217
89
2
1104
34
21
7
36
1.82
21197--21325
64
2.0
64
93
3
224
28
10
15
44
1.80
30793--30826
15
2.3
15
94
0
59
32
11
2
52
1.53
38504--38531
2
14.0
2
100
0
56
50
0
0
50
1.00
47354--47476
62
2.0
62
85
6
169
39
21
11
27
1.88
50862--50922
27
2.3
27
91
0
95
22
9
24
42
1.84
57951--57993
14
3.1
14
79
0
59
32
20
11
34
1.89
70962--71020
21
2.7
23
76
10
61
49
8
10
32
1.67
71009--71129
22
5.5
22
74
7
88
39
11
13
35
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71669--71833
22
7.5
22
72
9
120
35
19
9
35
1.85
71980--72121
44
3.2
44
75
7
144
34
12
17
35
1.88
71980--72121
22
6.5
21
75
8
106
34
12
17
35
1.88
72091--72133
22
2.0
22
81
9
52
34
11
18
34
1.87
72130--72198
26
2.7
26
90
2
104
39
17
10
33
1.83
85116--85161
22
2.1
22
87
0
65
39
19
2
39
1.64
85310--85369
22
2.7
22
74
5
59
45
18
6
30
1.75
85580--85625
22
2.1
22
87
0
65
39
19
2
39
1.64
85645--85690
22
2.2
22
77
18
53
28
17
4
50
1.65
85664--86141
22
22.0
21
70
14
226
35
16
10
38
1.83
85664--86895
44
28.6
44
67
13
203
35
16
9
38
1.81
86338--86660
22
14.5
22
71
17
111
36
16
8
38
1.80
86499--86660
66
2.5
65
80
8
184
37
18
7
36
1.79
86691--86897
22
9.4
21
71
13
76
37
16
9
36
1.81
86678--86843
68
2.5
66
83
4
183
37
16
9
36
1.81
86683--86898
65
3.3
66
80
8
215
37
16
9
36
1.81
87981--88452
238
2.0
238
97
0
892
22
19
13
44
1.86
89626--89662
16
2.3
16
90
0
56
21
29
8
40
1.82
89816--89951
2
67.5
2
91
4
220
50
47
0
2
1.19
89955--89985
13
2.4
13
94
0
53
45
16
3
35
1.63
92685--92806
51
2.4
51
85
2
154
43
17
6
32
1.74
92741--92876
70
1.9
70
83
5
177
42
16
6
34
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93840--93988
71
2.1
71
100
0
298
30
10
15
42
1.81
98697--98725
6
4.8
6
100
0
58
86
0
13
0
0.58
100250--100303
19
2.6
21
77
19
60
38
18
3
38
1.69
103243--103278
17
2.1
17
100
0
72
33
0
50
16
1.46
103622--103683
13
4.8
13
75
0
61
40
17
8
33
1.79
103624--103674
26
2.0
26
92
0
84
41
17
7
33
1.79
107399--107480
42
2.0
42
82
4
103
50
0
23
26
1.50
112953--112977
11
2.3
11
100
0
50
64
28
0
8
1.22
112864--113033
85
2.0
84
98
1
331
47
21
3
28
1.67

Tables:   1

The End!