Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024102.1 Corchorus olitorius cultivar O-4 contig24135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16604

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3320--3430
26
4.2
27
82
6
147
43
24
15
17
1.87
3312--3421
54
2.0
54
89
3
168
45
23
14
16
1.84
3312--3421
27
4.1
28
81
8
129
45
23
14
16
1.84
3918--4657
30
24.4
30
90
3
1008
47
18
14
20
1.83
3918--4657
61
12.2
60
90
3
1008
47
18
14
20
1.83
5210--5626
36
11.7
35
82
4
460
40
17
20
20
1.91
5210--5594
107
3.6
106
88
3
515
41
17
20
21
1.90
5210--5626
177
2.3
178
87
1
586
40
17
20
20
1.91
7098--7128
14
2.3
14
94
5
55
35
12
6
45
1.68
7110--7146
17
2.2
17
90
9
58
29
10
5
54
1.57
7559--7589
2
15.5
2
93
0
53
51
3
0
45
1.17
9853--9899
22
2.1
22
96
0
85
46
17
6
29
1.72
10261--10307
22
2.1
22
96
0
85
48
17
19
14
1.81
10755--10796
2
21.0
2
90
0
57
42
0
4
52
1.22
10899--10966
26
2.6
26
79
4
66
45
22
14
17
1.85
16174--16218
24
2.0
23
83
12
58
15
11
20
53
1.72

Tables:   1

The End!