Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024105.1 Corchorus olitorius cultivar O-4 contig24138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11693
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:2939 original size:13 final size:13

Alignment explanation


    Indices: 2921--2946  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2911 AAGATCTCAA

                         
       2921 CAAAAATCATCAC
          1 CAAAAATCATCAC

                         
       2934 CAAAAATCATCAC
          1 CAAAAATCATCAC

       2947 TCATGCCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15


Consensus pattern (13 bp):   
CAAAAATCATCAC

Found at i:4500 original size:22 final size:22

Alignment explanation


    Indices: 4472--4528  Score: 114
    Period size: 22  Copynumber: 2.6  Consensus size: 22

       4462 AAATATTACC

                                  
       4472 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGGCAGCCATA

                                  
       4494 ATAATTATTTTTGGCAGCCATA
          1 ATAATTATTTTTGGCAGCCATA

                         
       4516 ATAATTATTTTTG
          1 ATAATTATTTTTG

       4529 CAAAGAAATA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   35  1.00

ACGTcount: A:0.32, C:0.11, G:0.12, T:0.46


Consensus pattern (22 bp):   
ATAATTATTTTTGGCAGCCATA
Done.