Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024107.1 Corchorus olitorius cultivar O-4 contig24140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55523

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--545
49
2.7
48
83
8
140
29
15
6
49
1.68
722--799
37
2.0
38
87
7
113
26
14
23
35
1.93
6340--6390
17
3.1
16
86
8
66
21
21
21
35
1.96
14986--15034
21
2.3
21
79
6
55
67
8
8
16
1.40
16353--16392
18
2.2
18
86
13
55
30
20
2
47
1.63
21069--21198
27
4.8
27
87
0
179
21
20
23
35
1.96
22340--22429
27
3.3
27
93
3
153
18
17
25
37
1.93
22803--22827
12
2.1
12
100
0
50
28
8
8
56
1.57
29863--29923
8
7.4
8
77
14
61
72
1
14
11
1.20
29863--29923
17
3.7
16
75
14
61
72
1
14
11
1.20
30304--30349
19
2.4
19
88
0
74
82
6
0
10
0.83
30310--30377
28
2.5
26
77
17
75
75
8
1
14
1.12
30676--30705
9
3.3
9
95
0
51
86
0
13
0
0.57
32052--32383
169
2.0
169
92
0
547
28
20
17
33
1.95
32351--32391
20
2.0
20
90
0
64
24
24
21
29
1.99
32417--32569
39
4.2
39
80
14
198
19
15
15
49
1.80
32478--33144
30
21.7
30
88
5
774
19
15
18
46
1.84
33017--33070
18
3.3
18
65
24
55
18
16
12
51
1.75
33216--33299
32
2.7
32
81
1
89
22
14
13
50
1.77
33665--33750
27
3.1
27
90
3
136
16
18
27
37
1.92
43370--43408
19
2.0
20
85
5
53
64
7
17
10
1.48
45708--45733
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45731--45821
4
22.8
4
93
0
155
27
1
21
49
1.57
46011--46056
22
2.1
22
95
0
83
45
2
0
52
1.13
48373--48400
2
14.0
2
100
0
56
50
0
0
50
1.00
49283--49317
18
1.9
18
88
0
52
48
0
51
0
1.00
49356--49458
13
8.0
13
84
2
136
9
45
41
2
1.52
54583--55523
199
4.7
200
87
3
1289
33
14
18
33
1.91

Tables:   1

The End!