Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024108.1 Corchorus olitorius cultivar O-4 contig24141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27331

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4282--4335
28
1.9
28
92
0
90
25
33
9
31
1.88
12415--12475
27
2.3
27
82
0
68
34
9
22
32
1.87
17235--17291
28
2.0
28
100
0
114
33
21
17
28
1.96
17239--17299
28
2.4
25
86
10
79
32
18
16
32
1.93
18258--18336
39
2.1
39
92
2
133
11
16
11
60
1.58
18739--18764
11
2.4
11
100
0
52
92
7
0
0
0.39
22524--22591
35
2.0
34
91
2
109
27
17
14
39
1.89
22639--22670
16
2.0
16
93
0
55
53
0
0
46
1.00
22623--22670
19
2.5
19
83
10
62
47
0
0
52
1.00
22802--22836
18
1.9
18
94
0
61
28
8
11
51
1.67
25807--25894
41
2.1
41
85
0
113
27
12
13
46
1.79

Tables:   1

The End!