Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024110.1 Corchorus olitorius cultivar O-4 contig24143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34


Found at i:1682 original size:31 final size:31

Alignment explanation


    Indices: 1647--1708  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1637 AAAGTTATTA

                       * *                 
       1647 ATGAATATTGTGATTATTCATGAATCAAGAG
          1 ATGAATATTGTAAATATTCATGAATCAAGAG

                                           
       1678 ATGAATATTGTAAATATTCATGAATCAAGAG
          1 ATGAATATTGTAAATATTCATGAATCAAGAG

       1709 TTCTCTTCTG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34


Consensus pattern (31 bp):   
ATGAATATTGTAAATATTCATGAATCAAGAG
Done.